Evidence map›Paper›PMID 21447998›Full record

ArticleCell cycle (Georgetown, Tex.)2011

A genomic analysis of chronological longevity factors in budding yeast.

Christopher R Burtner, Christopher J Murakami, Brady Olsen, Brian K Kennedy, Matt Kaeberlein

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
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  14. Integrins in disguise - mechanosensors inMicrobial cell (Graz, Austria) · 2019
    Review
  15. Review
  16. Article
  17. Some Metabolites Act as Second Messengers in Yeast Chronological Aging.International journal of molecular sciences · 2018
    Review
  18. Article
  19. Natural variation of chronological aging in theNPJ aging and mechanisms of disease · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Christopher R BurtnerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Christopher J Murakami
Brady Olsen
Brian K Kennedy
Matt Kaeberlein
Schlumberger (Ireland) · IEUniversity of Washington · US

Funding

University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Su-In Lee · 1995 to 2026
$27.1M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Genome-wide Analysis of Aging in YeastR01AG025549 · NIA · UNIVERSITY OF WASHINGTON · PI KENNEDY, BRIAN K · 2006 to 2010
$1.5M
Large-Scale quantitative analysis of chronological aging in yeastR21AG031965 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT · 2008 to 2009
$330k
Howard Hughes Medical InstituteNIA NIH HHS P30 AG013280NIA NIH HHS P30AG013280NIA NIH HHS R01 AG025549NIA NIH HHS R01AG025549NIA NIH HHS R21 AG031965NIA NIH HHS R21AG031965NIA NIH HHS T32 AG000057NIA NIH HHS T32AG000057
6 · The paper itself

Abstract

Chronological life span (CLS) has been studied as an aging paradigm in yeast. A few conserved aging genes have been identified that modulate both chronological and replicative longevity in yeast as well as longevity in the nematode Caenorhabditis elegans; however, a comprehensive analysis of the relationship between genetic control of chronological longevity and aging in other model systems has yet to be reported. To address this question, we performed a functional genomic analysis of chronological longevity for 550 single-gene deletion strains, which accounts for approximately 12% of the viable homozygous diploid deletion strains in the yeast ORF deletion collection. This study identified 33 previously unknown determinants of CLS. We found no significant enrichment for enhanced CLS among deletions corresponding to yeast orthologs of worm aging genes or among replicatively long-lived deletion strains, although a trend toward overlap was noted. In contrast, a subset of gene deletions identified from a screen for reduced acidification of culture media during growth to stationary phase was enriched for increased CLS. These results suggest that genetic control of CLS under the most commonly utilized assay conditions does not strongly overlap with longevity determinants in C. elegans, with the existing confined to a small number of genetic pathways. These data also further support the model that acidification of the culture medium plays an important role in survival during chronological aging in synthetic medium, and suggest that chronological aging studies using alternate medium conditions may be more informative with regard to aging of multicellular eukaryotes.

Indexed as

AgingAnimalsCaenorhabditis elegansCulture MediaGene DeletionGene Expression Regulation, FungalGenome, FungalGenome-Wide Association StudyLongevityModels, AnimalSaccharomyces cerevisiaeCulture Media

Identifiers

PMID21447998
PMCPMC3356828
OpenAlexW2059207861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.