Evidence map›Paper›PMID 21447552›Full record

ArticleDevelopment (Cambridge, England)2011

Regulation of endoderm formation and left-right asymmetry by miR-92 during early zebrafish development.

Nan Li, Chunyao Wei, Abigail F Olena, James G Patton

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Epigenetic Regulation of Organ Regeneration in Zebrafish.Journal of cardiovascular development and disease · 2018
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Retinoic acid-dependent regulation of miR-19 expression elicits vertebrate axis defects.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2013
    Article
  14. Celf1 is required for formation of endoderm-derived organs in zebrafish.International journal of molecular sciences · 2013
    Article
  15. Article
  16. Left-right asymmetry in zebrafish.Cellular and molecular life sciences : CMLS · 2012
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nan LiDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Chunyao Wei
Abigail F Olena
James G Patton
Vanderbilt University · US

Funding

Training Program in Stem Cell and Regenerative Developmental BiologyT32HD007502 · NICHD · VANDERBILT UNIVERSITY · PI WRIGHT, CHRISTOPHER V · 1997 to 2022
$5.4M
Identification and Function of Zebrafish microRNAsR01GM075790 · NIGMS · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 2005 to 2009
$1.3M
NICHD NIH HHS T32 HD007502NIGMS NIH HHS GM 075790NIGMS NIH HHS R01 GM075790
6 · The paper itself

Abstract

microRNAs (miRNAs) are a family of 21-23 nucleotide endogenous non-coding RNAs that post-transcriptionally regulate gene expression in a sequence-specific manner. Typically, miRNAs downregulate target genes by recognizing and recruiting protein complexes to 3'UTRs, followed by translation repression or mRNA degradation. miR-92 is a well-studied oncogene in mammalian systems. Here, using zebrafish as a model system, we uncovered a novel tissue-inductive role for miR-92 during early vertebrate development. Overexpression resulted in reduced endoderm formation during gastrulation with consequent cardia and viscera bifida. By contrast, depletion of miR-92 increased endoderm formation, which led to abnormal Kupffer's vesicle development and left-right patterning defects. Using target prediction algorithms and reporter constructs, we show that gata5 is a target of miR-92. Alteration of gata5 levels reciprocally mirrored the effects of gain and loss of function of miR-92. Moreover, genetic epistasis experiments showed that miR-92-mediated defects could be substantially suppressed by modulating gata5 levels. We propose that miR-92 is a critical regulator of endoderm formation and left-right asymmetry during early zebrafish development and provide the first evidence for a regulatory function for gata5 in the formation of Kupffer's vesicle and left-right patterning.

Indexed as

AnimalsAnimals, Genetically ModifiedBase SequenceBody PatterningCardiaEmbryo, NonmammalianEndodermGATA5 Transcription FactorGene Expression Regulation, DevelopmentalMicroRNAsTissue DistributionVisceraZebrafishGATA5 Transcription FactorMicroRNAs

Identifiers

PMID21447552
PMCPMC3074454
OpenAlexW2131738639

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.