Evidence map›Paper›PMID 21447378›Full record

ArticleGenomics2011

Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence.

Leka Papazisi, David A Rasko, Shashikala Ratnayake, Geoff R Bock, Brian G Remortel, Lakshmi Appalla, Jia Liu, Tatiana Dracheva, John C Braisted, Shamira Shallom and 9 more

Abstract read
In one paragraph

Article in Genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Comprehensive genomic analysis of a novelMicrobiology spectrum · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Adaptive Strategies ofIndian journal of microbiology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Leka PapazisiPathogen Functional Genomics Resource Center (PFGRC), The J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.
David A Rasko
Shashikala Ratnayake
Geoff R Bock
Brian G Remortel
Lakshmi Appalla
Jia Liu
Tatiana Dracheva
John C Braisted
Shamira Shallom
Behnam Jarrahi
Erik Snesrud
Susie Ahn
Qiang Sun
Jennifer Rilstone
Ole Andreas Okstad
Anne-Brit Kolstø
Robert D Fleischmann
Scott N Peterson

Funding

NIAID NIH HHS N01 AI015447
6 · The paper itself

Abstract

Here we report the use of a multi-genome DNA microarray to investigate the genome diversity of Bacillus cereus group members and elucidate the events associated with the emergence of Bacillus anthracis the causative agent of anthrax-a lethal zoonotic disease. We initially performed directed genome sequencing of seven diverse B. cereus strains to identify novel sequences encoded in those genomes. The novel genes identified, combined with those publicly available, allowed the design of a "species" DNA microarray. Comparative genomic hybridization analyses of 41 strains indicate that substantial heterogeneity exists with respect to the genes comprising functional role categories. While the acquisition of the plasmid-encoded pathogenicity island (pXO1) and capsule genes (pXO2) represents a crucial landmark dictating the emergence of B. anthracis, the evolution of this species and its close relatives was associated with an overall shift in the fraction of genes devoted to energy metabolism, cellular processes, transport, as well as virulence.

Indexed as

Evolution, MolecularGenome, BacterialBacillus anthracisOligonucleotide Array Sequence AnalysisPhylogenyVirulence

Identifiers

PMID21447378
PMCPMC3129444

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.