Evidence map›Paper›PMID 21447344›Full record

ArticleInternational journal for parasitology2011

Schistosoma mansoni U6 gene promoter-driven short hairpin RNA induces RNA interference in human fibrosarcoma cells and schistosomules.

Mary A Ayuk, Sutas Suttiprapa, Gabriel Rinaldi, Victoria H Mann, Clarence M Lee, Paul J Brindley

Abstract read
In one paragraph

Article in International journal for parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Transfection of Platyhelminthes.BioMed research international · 2015
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. New frontiers in schistosoma genomics and transcriptomics.Journal of parasitology research · 2012
    Article
  12. Review
  13. Article
  14. Review
  15. Progress with schistosome transgenesis.Memorias do Instituto Oswaldo Cruz · 2011
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Mary A AyukDepartment of Microbiology, Immunology and Tropical Medicine, The George Washington University Medical Center, 2300 I Street, NW, Washington, DC 20037, USA.
Sutas Suttiprapa
Gabriel Rinaldi
Victoria H Mann
Clarence M Lee
Paul J Brindley
George Washington University · USHoward University · USUniversidad de la República · UYWashington University Medical Center · US

Funding

Transduction of Schistosoma mansoni by pseudotyped retrovirusR01AI072773 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI BRINDLEY, PAUL J · 2007 to 2011
$2.5M
NIAID NIH HHS HHSN272201000005CNIAID NIH HHS HHSN272201000005INIAID NIH HHS R01 AI072773
6 · The paper itself

Abstract

RNA interference (RNAi) mediated by short hairpin-RNA (shRNA) expressing plasmids can induce specific and long-term knockdown of specific mRNAs in eukaryotic cells. To develop a vector-based RNAi model for Schistosoma mansoni, the schistosome U6 gene promoter was employed to drive expression of shRNA targeting reporter firefly luciferase. An upstream region of a U6 gene predicted to contain the promoter was amplified from genomic DNA of S. mansoni. A shRNA construct driven by the predicted U6 promoter targeting luciferase was assembled and cloned into plasmid pXL-Bac II, the construct termed pXL-BacII_SmU6-shLuc. Luciferase expression in transgenic fibrosarcoma HT-1080 cells was significantly reduced 96 h following transduction with plasmid pXL-BacII_SmU6-shLuc, which encodes luciferase mRNA-specific shRNA. In a similar fashion, schistosomules of S. mansoni were transformed with the SmU6-shLuc or control constructs. Firefly luciferase mRNA was introduced into transformed schistosomules after which luciferase activity was analyzed. Significantly less activity was present in schistosomules transfected with pXL-BacII_SmU6-shLuc compared with controls. The findings revealed that the putative S. mansoni U6 gene promoter of 270 bp in length was active in human cells and schistosomes. Given that the U6 gene promoter drove expression of shRNA from an episome, the findings also indicate the potential of this putative RNA polymerase III dependent promoter as a component regulatory element in vector-based RNAi for functional genomics of schistosomes.

Indexed as

RNA InterferenceAnimalsCell Line, TumorGenes, ReporterGenomicsHumansLuciferasesMolecular BiologyMolecular Sequence DataPlasmidsPromoter Regions, GeneticRNA, Small InterferingSchistosoma mansoniSequence Analysis, DNATranscription, GeneticLuciferasesRNA, Small Interfering

Identifiers

PMID21447344
PMCPMC3094803
OpenAlexW2037104806

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.