Evidence map›Paper›PMID 21444815›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Transition from a plasmid to a chromosomal mode of replication entails additional regulators.

Tatiana Venkova-Canova, Dhruba K Chattoraj

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Recollections of a Helmstetter Disciple.Life (Basel, Switzerland) · 2023
    Review
  5. Genomic dissection of theMicrobial genomics · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Conjugative plasmid-encoded toxin-antitoxin system PrpT/PrpA directly controls plasmid copy number.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Functionality of Two Origins of Replication inFrontiers in microbiology · 2018
    Article
  15. Review
  16. Article
  17. The Divided Bacterial Genome: Structure, Function, and Evolution.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Tatiana Venkova-CanovaLaboratory of Biochemistry and Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Dhruba K Chattoraj
Center for Cancer Research · USNational Institutes of Health · US

Funding

Mechanisms of Chromosome Maintenance in BacteriaZIABC010277 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CHATTORAJ, DHRUBA K · 2009 to 2021
$10.4M
Intramural NIH HHS
6 · The paper itself

Abstract

Plasmid origins of replication are rare in bacterial chromosomes, except in multichromosome bacteria. The replication origin of Vibrio cholerae chromosome II (chrII) closely resembles iteron-bearing plasmid origins. Iterons are repeated initiator binding sites in plasmid origins and participate both in replication initiation and its control. The control is mediated primarily by coupling of iterons via the bound initiators ("handcuffing"), which causes steric hindrance to the origin. The control in chrII must be different, since the timing of its replication is cell cycle-specific, whereas in plasmids it is random. Here we show that chrII uses, in addition to iterons, another kind of initiator binding site, named 39-mers. The 39-mers confer stringent control by increasing handcuffing of iterons, presumably via initiator remodeling. Iterons, although potential inhibitors of replication themselves, restrain the 39-mer-mediated inhibition, possibly by direct coupling ("heterohandcuffing"). We propose that the presumptive transition of a plasmid to a chromosomal mode of control requires additional regulators to increase the stringency of control, and as will be discussed, to gain the capacity to modulate the effectiveness of the regulators at different stages of the cell cycle.

Indexed as

DNA ReplicationBase SequenceCell CycleChromosomes, BacterialDNA HelicasesElectrophoretic Mobility Shift AssayEscherichia coliPlasmidsReplication OriginTrans-ActivatorsVibrio choleraeDNA Helicasesreplication initiator proteinTrans-Activators

Identifiers

PMID21444815
PMCPMC3076835
OpenAlexW2049569143

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.