Evidence map›Paper›PMID 21444771›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Quaternary structures of HIV Env immunogen exhibit conformational vicissitudes and interface diminution elicited by ligand binding.

Carlos G Moscoso, Yide Sun, Selina Poon, Li Xing, Elaine Kan, Loïc Martin, Dominik Green, Frank Lin, Anders G Vahlne, Susan Barnett and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
  2. Article
  3. Article
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  6. Article
  7. Article
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  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. HIV-1 envelope glycoprotein structure.Current opinion in structural biology · 2013
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Kinetic mechanism for HIV-1 neutralization by antibody 2G12 entails reversible glycan binding that slows cell entry.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Carlos G MoscosoDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA.
Yide Sun
Selina Poon
Li Xing
Elaine Kan
Loïc Martin
Dominik Green
Frank Lin
Anders G Vahlne
Susan Barnett
Indresh Srivastava
R Holland Cheng
University of California, Davis · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRKarolinska Institutet · SENational Institutes of Health · US

Funding

Prime-Boost Strategies using IscomsP01AI048225 · NIAID · NOVARTIS VACCINES AND DIAGNOSTICS, INC. · PI BARNETT, SUSAN W · 2002 to 2004
$6.6M
Present Homologous and Heterologous Antigen with Hepatitis E VirusR56AI095382 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHENG, R.HOLLAND · 2012 to 2012
$385k
NIAID NIH HHS 5 P01 AI48225-03NIAID NIH HHS P01 AI048225NIAID NIH HHS R56 AI095382
6 · The paper itself

Abstract

The human immunodeficiency virus envelope protein is the key element mediating entry into host cells. Conformational rearrangement of Env upon binding to the host CD4 receptor and chemokine coreceptor drives membrane fusion. We elucidated the quaternary arrangement of the soluble Env trimeric immunogen o-gp140ΔV2TV1, in both its native (unliganded) and CD4-induced (liganded) states by cryoelectron microscopy and molecular modeling. The liganded conformation was elicited by binding gp140 to the synthetic CD4-mimicking miniprotein CD4m. Upon CD4m binding, an outward domain shift of the three gp120 subunits diminishes gp120-gp41 interactions, whereas a "flat open" concave trimer apex is observed consequent to gp120 tilting away from threefold axis, likely juxtaposing the fusion peptide with the host membrane. Additional features observed in the liganded conformation include rotations of individual gp120 subunits that may release gp41 for N- and C-helix refolding and also may lead to optimal exposure of the elicited coreceptor binding site. Such quaternary arrangements of gp140 lead to the metastable liganded conformation, with putative locations of exposed epitopes contributing to a description of sequential events occurring prior to membrane fusion. Our observations imply a mechanism whereby a soluble Env trimeric construct, as opposed to trimers extracted from virions, may better expose crucial epitopes such as the CD4 binding site and V3, as well as epitopes in the vicinity of gp41, subsequent to conjugation with CD4m. Structural features gleaned from our studies should aid the design of Env-based immunogens for inducement of potent broadly neutralizing antibodies against exposed conformational epitopes.

Indexed as

CD4 AntigensCryoelectron MicroscopyCrystallography, X-Rayenv Gene Products, Human Immunodeficiency VirusHIV-1HumansImmunodominant EpitopesLigandsModels, MolecularProtein Structure, QuaternaryCD4 Antigensenv Gene Products, Human Immunodeficiency Virusgp140 envelope protein, Human immunodeficiency virus 1Immunodominant EpitopesLigands

Identifiers

PMID21444771
PMCPMC3076850
OpenAlexW2047101118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.