Evidence map›Paper›PMID 21444721›Full record

ArticleMolecular and cellular biology2011

A conserved patch near the C terminus of histone H4 is required for genome stability in budding yeast.

Yao Yu, Madhusudhan Srinivasan, Shima Nakanishi, Janet Leatherwood, Ali Shilatifard, Rolf Sternglanz

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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  4. Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yao YuDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794, USA.
Madhusudhan Srinivasan
Shima Nakanishi
Janet Leatherwood
Ali Shilatifard
Rolf Sternglanz
Stony Brook University · USStowers Institute for Medical Research · US

Funding

Wiring of Gene Expression in the Early Meiotic ProgramP01GM088297 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FUTCHER, BRUCE BRUCE · 2010 to 2014
$7.4M
Chromatin Modifications by Histone Ubiquitination and MethylationsR01GM069905 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SHILATIFARD, ALI · 2004 to 2015
$4.7M
YEAST HISTONE ACETYLATION GENES AND MUTANTSR01GM055641 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 1997 to 2009
$2.6M
Transcription circuitry of the S. pombe cell cycleR01GM076272 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LEATHERWOOD, JANET K · 2007 to 2010
$1.1M
NIGMS NIH HHS GM55641NIGMS NIH HHS GM69905NIGMS NIH HHS GM76272NIGMS NIH HHS P01 GM088297NIGMS NIH HHS P01GM88297NIGMS NIH HHS R01 GM055641NIGMS NIH HHS R01 GM069905NIGMS NIH HHS R01 GM076272
6 · The paper itself

Abstract

A screen of Saccharomyces cerevisiae histone alanine substitution mutants revealed that mutations in any of three adjacent residues, L97, Y98, or G99, near the C terminus of H4 led to a unique phenotype. The mutants grew slowly, became polyploid or aneuploid rapidly, and also lost chromosomes at a high rate, most likely because their kinetochores were not assembled properly. There was lower histone occupancy, not only in the centromeric region, but also throughout the genome for the H4 mutants. The mutants displayed genetic interactions with the genes encoding two different histone chaperones, Rtt106 and CAF-I. Affinity purification of Rtt106 and CAF-I from yeast showed that much more H4 and H3 were bound to these histone chaperones in the case of the H4 mutants than in the wild type. However, in vitro binding experiments showed that the H4 mutant proteins bound somewhat more weakly to Rtt106 than did wild-type H4. These data suggest that the H4 mutant proteins, along with H3, accumulate on Rtt106 and CAF-I in vivo because they cannot be deposited efficiently on DNA or passed on to the next step in the histone deposition pathway, and this contributes to the observed genome instability and growth defects.

Indexed as

Genomic InstabilityAmino Acid MotifsAmino Acid SubstitutionChromatinFlow CytometryGenome, FungalHistonesKinetochoresMolecular ChaperonesMutationPhenotypePloidiesProtein BindingRibonucleasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinHistonesMolecular ChaperonesPOP2 protein, S cerevisiaeRibonucleasesRtt106 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID21444721
PMCPMC3133250
OpenAlexW2150673680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.