Evidence map›Paper›PMID 21444632›Full record

ArticleRNA (New York, N.Y.)2011

The poly(rC)-binding protein alphaCP2 is a noncanonical factor in X. laevis cytoplasmic polyadenylation.

Melanie R Vishnu, Marina Sumaroka, Peter S Klein, Stephen A Liebhaber

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Specificity factors in cytoplasmic polyadenylation.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Melanie R VishnuDepartment of Genetics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Marina Sumaroka
Peter S Klein
Stephen A Liebhaber
University of Pennsylvania · US

Funding

HEMATOPOIESIS TRAINING GRANTT32DK007780 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TONG, WEI · 1999 to 2023
$6.7M
Post-Transcriptional controls in Mammalian Erythroid DifferentiationR01HL065449 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 2000 to 2019
$4.1M
Alpha-Globin expression: Post transcriptional mechanismsR37HL065449 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 2004 to 2013
$3.9M
Early activation of the zygotic genomeR01GM076621 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KLEIN, PETER S · 2006 to 2009
$1.2M
NHLBI NIH HHS R01 HL065449NHLBI NIH HHS R37 HL065449NHLBI NIH HHS R37-MERIT HL65449NIDDK NIH HHS T32 DK007780NIDDK NIH HHS T32-DK07780NIGMS NIH HHS R01 GM076621NIGMS NIH HHS R01-GM076621
6 · The paper itself

Abstract

Post-transcriptional control of mRNA stability and translation is central to multiple developmental pathways. This control can be linked to cytoplasmic polyadenylation in certain settings. In maturing Xenopus oocytes, specific mRNAs are targeted for polyadenylation via recruitment of the Cytoplasmic Polyadenylation Element (CPE) binding protein (CPEB) to CPE(s) within the 3' UTR. Cytoplasmic polyadenylation is also critical to early embryonic events, although corresponding determinants are less defined. Here, we demonstrate that the Xenopus ortholog of the poly(rC) binding protein αCP2 can recruit cytoplasmic poly(A) polymerase activity to mRNAs in Xenopus post-fertilization embryos, and that this recruitment relies on cis sequences recognized by αCP2. We find that the hα-globin 3' UTR, a validated mammalian αCP2 target, constitutes an effective target for cytoplasmic polyadenylation in Xenopus embryos, but not during Xenopus oocyte maturation. We further demonstrate that the cytoplasmic polyadenylation activity is dependent on the action of the C-rich αCP-binding site in conjunction with the adjacent AAUAAA. Consistent with its ability to target mRNA for poly(A) addition, we find that XαCP2 associates with core components of the Xenopus cytoplasmic polyadenylation complex, including the cytoplasmic poly(A) polymerase XGLD2. Furthermore, we observe that the C-rich αCP-binding site can robustly enhance the activity of a weak canonical oocyte maturation CPE in early embryos, possibly via a direct interaction between XαCP2 and CPEB1. These studies establish XαCP2 as a novel cytoplasmic polyadenylation trans factor, indicate that C-rich sequences can function as noncanonical cytoplasmic polyadenylation elements, and expand our understanding of the complexities underlying cytoplasmic polyadenylation in specific developmental settings.

Indexed as

Polyadenylation3' Untranslated RegionsAnimalsCytoplasmFemalemRNA Cleavage and Polyadenylation FactorsOocytesPoly CProtein BindingRNA, MessengerSubstrate SpecificityXenopus laevisXenopus Proteins3' Untranslated RegionsmRNA Cleavage and Polyadenylation FactorsPoly CRNA, MessengerXenopus Proteins

Identifiers

PMID21444632
PMCPMC3078743
OpenAlexW2131643862

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.