ArticleAnnals of botany2011
High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
Article in Annals of botany, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 53 citations in OpenAlex.
- Genome-wide identification and stress-responsive expression profiling of the TCP gene family in Cenchrus fungigraminus under drought and cold stress.BMC genomics · 2025Article
- Genome-wide identification and expression analysis of the3 Biotech · 2025Article
- Genome-Wide Identification and Expression Analysis of the TCP Gene Family Related to Developmental and Abiotic Stress in Ginger.Plants (Basel, Switzerland) · 2023Article
- Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Plants (Basel, Switzerland) · 2023Article
- TCP Transcription Factors in Plant Reproductive Development: Juggling Multiple Roles.Biomolecules · 2023Review
- Genomic characterization and expression analysis ofPlant signaling & behavior · 2022Article
- Chasing Consistency: An Update of theGenes · 2022Article
- Article
- Evolutionary analyses and expression patterns of TCP genes in Ranunculales.Frontiers in plant science · 2022Article
- Genomic survey of TCP transcription factors in plants: Phylogenomics, evolution and their biology.Frontiers in genetics · 2022Review
- Comprehensive evolutionary analysis of theFrontiers in plant science · 2022Article
- Extending the Toolkit for Beauty: Differential Co-Expression ofInternational journal of molecular sciences · 2021Article
- COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals.Nature communications · 2020Article
- Silencing of PhLA, a CIN-TCP gene, causes defected petal conical epidermal cell formation and results in reflexed corolla lobes in petunia.Botanical studies · 2020Article
- The Regulation of CIN-like TCP Transcription Factors.International journal of molecular sciences · 2020Review
- Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants.International journal of molecular sciences · 2019Article
- Genome-Wide Analysis of TCP Family Genes inInternational journal of molecular sciences · 2019Article
- TCP Transcription Factors in Moso Bamboo (Frontiers in plant science · 2018Article
- Genome-Wide Identification and Expression Profiling of the TCP Family Genes in Spike and Grain Development of Wheat (Frontiers in plant science · 2018Article
- Transcriptome-Wide Identification and Expression Analysis of DIVARICATA- and RADIALIS-Like Genes of the Mediterranean Orchid Orchis italica.Genome biology and evolution · 2017Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
BACKGROUND AND
aimsThe TCP family is an ancient group of plant developmental transcription factors that regulate cell division in vegetative and reproductive structures and are essential in the establishment of flower zygomorphy. In-depth research on eudicot TCPs has documented their evolutionary and developmental role. This has not happened to the same extent in monocots, although zygomorphy has been critical for the diversification of Orchidaceae and Poaceae, the largest families of this group. Investigating the evolution and function of TCP-like genes in a wider group of monocots requires a detailed phylogenetic analysis of all available sequence information and a system that facilitates comparing genetic and functional information.
methodsThe phylogenetic relationships of TCP-like genes in monocots were investigated by analysing sequences from the genomes of Zea mays, Brachypodium distachyon, Oryza sativa and Sorghum bicolor, as well as EST data from several other monocot species. KEY
resultsAll available monocot TCP-like sequences are associated in 20 major groups with an average identity ≥64 % and most correspond to well-supported clades of the phylogeny. Their sequence motifs and relationships of orthology were documented and it was found that 67 % of the TCP-like genes of Sorghum, Oryza, Zea and Brachypodium are in microsyntenic regions. This analysis suggests that two rounds of whole genome duplication drove the expansion of TCP-like genes in these species.
conclusionsA system of classification is proposed where putative or recognized monocot TCP-like genes are assigned to a specific clade of PCF-, CIN- or CYC/tb1-like genes. Specific biases in sequence data of this family that must be tackled when studying its molecular evolution and phylogeny are documented. Finally, the significant retention of duplicated TCP genes from Zea mays is considered in the context of balanced gene drive.
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