Evidence map›Paper›PMID 21443207›Full record

ArticleJournal of the American Chemical Society2011

Site-specific hydration dynamics in the nonpolar core of a molten globule by dynamic nuclear polarization of water.

Brandon D Armstrong, Jennifer Choi, Carlos López, Darryl A Wesener, Wayne Hubbell, Silvia Cavagnero, Songi Han

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
12.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Water inside the Selectivity Filter of a KJournal of the American Chemical Society · 2024
    Article
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  6. Article
  7. Review
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  14. Protein Solvent Shell Structure Provides Rapid Analysis of Hydration Dynamics.Journal of chemical information and modeling · 2019
    Article
  15. Entropy connects water structure and dynamics in protein hydration layer.Physical chemistry chemical physics : PCCP · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Catalysts (Basel, Switzerland) · 2017
    Article
  20. Hydration Dynamics of a Peripheral Membrane Protein.Journal of the American Chemical Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Brandon D ArmstrongDepartment of Physics, University of California-Santa Barbara, Santa Barbara, California 93106, United States.
Jennifer Choi
Carlos López
Darryl A Wesener
Wayne Hubbell
Silvia Cavagnero
Songi Han
University of Wisconsin–Madison · USUniversity of California, Los Angeles · US

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
MOLECULAR BASIS OF MEMBRANE EXCITATIONR01EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1985 to 2019
$9.8M
NEI NIH HHS 5R01 EY005216NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY005216
6 · The paper itself

Abstract

Water-protein interactions play a direct role in protein folding. The chain collapse that accompanies protein folding involves extrusion of water from the nonpolar core. For many proteins, including apomyoglobin (apoMb), hydrophobic interactions drive an initial collapse to an intermediate state before folding to the final structure. However, the debate continues as to whether the core of the collapsed intermediate state is hydrated and, if so, what the dynamic nature of this water is. A key challenge is that protein hydration dynamics is significantly heterogeneous, yet suitable experimental techniques for measuring hydration dynamics with site-specificity are lacking. Here, we introduce Overhauser dynamic nuclear polarization at 0.35 T via site-specific nitroxide spin labels as a unique tool to probe internal and surface protein hydration dynamics with site-specific resolution in the molten globular, native, and unfolded protein states. The (1)H NMR signal enhancement of water carries information about the local dynamics of the solvent within ∼10 Å of a spin label. EPR is used synergistically to gain insights on local polarity and mobility of the spin-labeled protein. Several buried and solvent-exposed sites of apoMb are examined, each bearing a covalently bound nitroxide spin label. We find that the nonpoloar core of the apoMb molten globule is hydrated with water bearing significant translational dynamics, only 4-6-fold slower than that of bulk water. The hydration dynamics of the native state is heterogeneous, while the acid-unfolded state bears fast-diffusing hydration water. This study provides a high-resolution glimpse at the folding-dependent nature of protein hydration dynamics.

Indexed as

Spin LabelsAnimalsApoproteinsCircular DichroismElectron Spin Resonance SpectroscopyHydrophobic and Hydrophilic InteractionsMagnetic Resonance SpectroscopyModels, MolecularMyoglobinNitrogen OxidesProtein ConformationProtein FoldingSolventsSperm WhaleWaterapomyoglobinApoproteinsMyoglobinNitrogen OxidesSolventsSpin LabelsWater

Identifiers

PMID21443207
PMCPMC3095581
OpenAlexW2000044070

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.