Evidence map›Paper›PMID 21442410›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011

Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorghum.

Hiroyuki Kawahigashi, Shigemitsu Kasuga, Tsuyu Ando, Hiroyuki Kanamori, Jianzhong Wu, Jun-ichi Yonemaru, Takashi Sazuka, Takashi Matsumoto

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  10. Expression ofFrontiers in plant science · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Hiroyuki KawahigashiNational Institute of Agrobiological Sciences, Tsukuba, 305-8602, Japan. shiwak@affrc.go.jp
Shigemitsu Kasuga
Tsuyu Ando
Hiroyuki Kanamori
Jianzhong Wu
Jun-ichi Yonemaru
Takashi Sazuka
Takashi Matsumoto
Institute of Agrobiological Sciences · JPNagoya University · JPShinshu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Target leaf spot is one of the major sorghum diseases in southern Japan and caused by a necrotrophic fungus, Bipolaris sorghicola. Sorghum resistance to target leaf spot is controlled by a single recessive gene (ds1). A high-density genetic map of the ds1 locus was constructed with simple sequence repeat markers using progeny from crosses between a sensitive variety, bmr-6, and a resistant one, SIL-05, which allowed the ds1 gene to be genetically located within a 26-kb region on the short arm of sorghum chromosome 5. The sorghum genome annotation database for BTx623, for which the whole genome sequence was recently published, indicated a candidate gene from the Leucine-Rich Repeat Receptor Kinase family in this region. The candidate protein kinase gene was expressed in susceptible plants but was not expressed or was severely reduced in resistant plants. The expression patterns of ds1 gene and the phenotype of target leaf spot resistance were clearly correlated. Genomic sequences of this region in parental varieties showed a deletion in the promoter region of SIL-05 that could cause reduction of gene expression. We also found two ds1 alleles for resistant phenotypes with a stop codon in the coding region. The results shown here strongly suggest that the loss of function or suppression of the ds1 protein kinase gene leads to resistance to target leaf spot in sorghum.

Indexed as

AllelesAscomycotaChromosome MappingChromosomes, PlantCloning, MolecularDNA, PlantGene Expression Regulation, PlantGenes, PlantGenes, RecessiveGenetic MarkersImmunity, InnateJapanPhylogenyPlant DiseasesPlant ImmunityPlant LeavesDNA, PlantGenetic Markers

Identifiers

PMID21442410
OpenAlexW2065912127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.