Evidence map›Paper›PMID 21440557›Full record

ArticleJournal of molecular biology2011

Solution structure of the mSin3A PAH2-Pf1 SID1 complex: a Mad1/Mxd1-like interaction disrupted by MRG15 in the Rpd3S/Sin3S complex.

Ganesan Senthil Kumar, Tao Xie, Yongbo Zhang, Ishwar Radhakrishnan

Abstract read
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Class I histone deacetylase complex: Structure and functional correlates.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Structural Basis for Multi-specificity of MRG Domains.Structure (London, England : 1993) · 2015
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Sin3 interacts with Foxk1 and regulates myogenic progenitors.Molecular and cellular biochemistry · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ganesan Senthil KumarDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208-3500, USA.
Tao Xie
Yongbo Zhang
Ishwar Radhakrishnan
Northwestern University · USFlorida State University · US

Funding

Structural Biology of the Sin3 Corepressor ComplexR01GM064715 · NIGMS · NORTHWESTERN UNIVERSITY · PI RADHAKRISHNAN, ISHWAR · 2002 to 2011
$2.4M
STRUCTURAL BIOL RES: LUNG SURFACTANT PROTEINS, DISTRESSS10RR019071 · NCRR · NORTHWESTERN UNIVERSITY · PI RADHAKRISHNAN, ISHWAR · 2005 to 2005
$272k
NCRR NIH HHS S10 RR019071NIGMS NIH HHS R01 GM064715
6 · The paper itself

Abstract

Histone deacetylation constitutes an important mechanism for silencing genes. The histone-deacetylase-associated mammalian Rpd3S/Sin3S corepressor complex plays key roles in repressing aberrant gene transcription from cryptic transcription initiation sites and in mitigating RNA polymerase II progression in intragenic regions of actively transcribed genes. The Sin3 corepressor functions as a molecular adaptor linking histone deacetylases on the one hand, with the chromatin targeting subunits Pf1 and MRG15 on the other. Pf1 also functions as an adaptor by interacting with MRG15 and engaging in multivalent interactions with Sin3 targeting among other domains the two N-terminal paired amphipathic helix (PAH) domains that serve as sites of interaction with sequence-specific DNA-binding transcription factors. Here, we structurally and functionally evaluate the interaction between the PAH2 domain of mSin3A and the Sin3 interaction domain 1 (SID1) motif of Pf1 and find the structural aspects to be reminiscent of the interaction between the Mad1/Mxd1 transcription factor and Sin3. Pf1 residues within a highly conserved sequence motif immediately C-terminal to SID1 appear not to be important for the interaction with Sin3 PAH2. Unexpectedly, the MRG15 subunit competes, rather than collaborates, with Sin3 for the Pf1 segment encompassing the two conserved motifs, implying competition between two subunits for another subunit of the same chromatin-modifying complex.

Indexed as

Amino Acid SequenceAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell Cycle ProteinsHistone Deacetylase 2Homeodomain ProteinsHumansMolecular Sequence DataNuclear ProteinsProtein ConformationProtein Interaction Domains and MotifsRepressor ProteinsSin3 Histone Deacetylase and Corepressor ComplexSolutionsTranscription FactorsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell Cycle ProteinsHDAC2 protein, humanHistone Deacetylase 2Homeodomain ProteinsMAD1L1 protein, humanMORF4L1 protein, humanMXD1 protein, humanNuclear ProteinsPHF12 protein, humanRepressor ProteinsSIN3A transcription factorSin3 Histone Deacetylase and Corepressor ComplexSolutionsTranscription Factors

Identifiers

PMID21440557
PMCPMC3096069
OpenAlexW2059953820

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.