Evidence map›Paper›PMID 21436584›Full record

ArticleThe Journal of clinical investigation2011

Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression.

Lukas D Wartman, David E Larson, Zhifu Xiang, Li Ding, Ken Chen, Ling Lin, Patrick Cahan, Jeffery M Klco, John S Welch, Cheng Li and 22 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 96 citations in OpenAlex.

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  14. Molecular cancer research : MCR · 2019
    Article
  15. Article
  16. Article
  17. Orchestration of H3K27 methylation: mechanisms and therapeutic implication.Cellular and molecular life sciences : CMLS · 2018
    Review
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 4 institutions in 1 country.

Lukas D WartmanDepartment of Internal Medicine, Division of Oncology, Stem Cell Biology Section, Washington University School of Medicine, Siteman Cancer Center, St. Louis, Missouri, USA.
David E Larson
Zhifu Xiang
Li Ding
Ken Chen
Ling Lin
Patrick Cahan
Jeffery M Klco
John S Welch
Cheng Li
Jacqueline E Payton
Geoffrey L Uy
Nobish Varghese
Rhonda E Ries
Mieke Hoock
Daniel C Koboldt
Michael D McLellan
Heather Schmidt
Robert S Fulton
Rachel M Abbott
Lisa Cook
Sean D McGrath
Xian Fan
Adam F Dukes
Tammi Vickery
Joelle Kalicki
Tamara L Lamprecht
Timothy A Graubert
Michael H Tomasson
Elaine R Mardis
Richard K Wilson
Timothy J Ley
Washington University in St. Louis · USFred Hutch Cancer Center · USHarvard University Press · USUniversity of Arkansas for Medical Sciences · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
Specimen Acquistition and Expression ProfilingP01CA101937 · NCI · WASHINGTON UNIVERSITY · PI LINK, DANIEL C · 2003 to 2023
$58.8M
Washington University Institute of Clinical and Translational Sciences (UL1)UL1RR024992 · NCRR · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2007 to 2011
$45.4M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
PRE-AND POSTGRADUATE TRAINING IN MOLECULAR HEMATOLOGYT32HL007088 · NHLBI · WASHINGTON UNIVERSITY · PI Grant Anthony Challen, Stephen Oh · 1985 to 2026
$14.1M
THE BIOLOGY OF PROMYELOCYTIC LEUKEMIA IN A MOUSE MODEL.R01CA083962 · NCI · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 2000 to 2014
$6.0M
NCATS NIH HHS UL1 TR000448NCI NIH HHS CA083962NCI NIH HHS CA101937NCI NIH HHS P01 CA101937NCI NIH HHS P30 CA091842NCI NIH HHS P30 CA91842NCI NIH HHS R01 CA083962NCRR NIH HHS UL1 RR024992NHLBI NIH HHS T32 HL007088
6 · The paper itself

Abstract

Acute promyelocytic leukemia (APL) is a subtype of acute myeloid leukemia (AML). It is characterized by the t(15;17)(q22;q11.2) chromosomal translocation that creates the promyelocytic leukemia-retinoic acid receptor α (PML-RARA) fusion oncogene. Although this fusion oncogene is known to initiate APL in mice, other cooperating mutations, as yet ill defined, are important for disease pathogenesis. To identify these, we used a mouse model of APL, whereby PML-RARA expressed in myeloid cells leads to a myeloproliferative disease that ultimately evolves into APL. Sequencing of a mouse APL genome revealed 3 somatic, nonsynonymous mutations relevant to APL pathogenesis, of which 1 (Jak1 V657F) was found to be recurrent in other affected mice. This mutation was identical to the JAK1 V658F mutation previously found in human APL and acute lymphoblastic leukemia samples. Further analysis showed that JAK1 V658F cooperated in vivo with PML-RARA, causing a rapidly fatal leukemia in mice. We also discovered a somatic 150-kb deletion involving the lysine (K)-specific demethylase 6A (Kdm6a, also known as Utx) gene, in the mouse APL genome. Similar deletions were observed in 3 out of 14 additional mouse APL samples and 1 out of 150 human AML samples. In conclusion, whole genome sequencing of mouse cancer genomes can provide an unbiased and comprehensive approach for discovering functionally relevant mutations that are also present in human leukemias.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBase SequenceDisease ProgressionDNA, NeoplasmHumansJanus Kinase 1Jumonji Domain-Containing Histone DemethylasesLeukemia, ExperimentalLeukemia, Promyelocytic, AcuteMiceMice, 129 StrainMolecular Sequence DataMutationOncogene Proteins, FusionDNA, NeoplasmJak1 protein, mouseJanus Kinase 1Jumonji Domain-Containing Histone DemethylasesKdm6b protein, mouseOncogene Proteins, Fusionpromyelocytic leukemia-retinoic acid receptor alpha fusion oncoprotein

Identifiers

PMID21436584
PMCPMC3069786
OpenAlexW2116407503

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.