Evidence map›Paper›PMID 21435940›Full record

ReviewCurrent opinion in plant biology2011

Genome demethylation and imprinting in the endosperm.

Matthew J Bauer, Robert L Fischer

Abstract readReview
In one paragraph

Review in Current opinion in plant biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. DNA methylation dynamics during germline development.Journal of integrative plant biology · 2022
    Review
  10. Review
  11. Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Epigenetics · 2019
    Article
  18. Article
  19. DNA demethylase ROS1 negatively regulates the imprinting ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Seed genome hypomethylated regions are enriched in transcription factor genes.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Matthew J BauerDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA.
Robert L Fischer

Funding

Regulation and Function of DNA Demethylation in ArabidopsisR01GM069415 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI FISCHER, ROBERT L, ZILBERMAN, DANIEL · 2004 to 2016
$3.8M
NIGMS NIH HHS R01 GM069415NIGMS NIH HHS R01-GM069415
6 · The paper itself

Abstract

Imprinting occurs in the endosperm of flowering plants. The endosperm, a product of central cell fertilization, is critical for embryo and seed development. Imprinting in the endosperm is mainly due to the inherited differences in gamete epigenetic composition. Studies have also shown that there are differences in genomic DNA methylation patterns between embryo and endosperm. Examining those differences, along with mutations in the DNA demethylase gene DEMETER, gives insight into the number of imprinted genes and how an antagonistic relationship between TE defense and gene regulation could evolutionarily affect imprinting establishment. Finally, studies demonstrate that DEMETER demethylase activity influences endosperm chromatin composition, and could possibly enhance DNA de novo methylation activity.

Indexed as

DNA MethylationGenome, PlantGenomic ImprintingArabidopsisArabidopsis ProteinsEndospermMagnoliopsidaN-Glycosyl HydrolasesPolycomb-Group ProteinsRepressor ProteinsSeedsTrans-ActivatorsZea maysArabidopsis ProteinsDEMETER protein, ArabidopsisN-Glycosyl HydrolasesPolycomb-Group ProteinsRepressor ProteinsTrans-Activators

Identifiers

PMID21435940
PMCPMC3082360

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.