Evidence map›Paper›PMID 21432932›Full record

ArticleProtein science : a publication of the Protein Society2011

Contributions of aromatic pairs to the folding and stability of long-lived human γD-crystallin.

Fanrong Kong, Jonathan King

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 47 citations in OpenAlex.

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  11. The βγ-crystallins: native state stability and pathways to aggregation.Progress in biophysics and molecular biology · 2014
    Review
  12. Group II archaeal chaperonin recognition of partially folded human γD-crystallin mutants.Protein science : a publication of the Protein Society · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Fanrong KongDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Jonathan King
Massachusetts Institute of Technology · US

Funding

Folding &Misfolding of Parallel Beta-Helix ProteinsR01GM017980 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 1985 to 2009
$4.9M
Human gammaD-Crystallin Folding Misfolding &Fibril FormR01EY015834 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 2005 to 2014
$3.5M
BACTERIOPHAGE ASSEMBLY AND ITS GENETIC CONTROLR37GM017980 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN A · 1988 to 1997
–
NEI NIH HHS EY015843NEI NIH HHS R01 EY015834NIGMS NIH HHS GM007287NIGMS NIH HHS GM17980NIGMS NIH HHS R01 GM017980
6 · The paper itself

Abstract

Human γD-crystallin (HγD-Crys) is a highly stable protein that remains folded in the eye lens for the majority of an individual's lifetime. HγD-Crys exhibits two homologous crystallin domains, each containing two Greek key motifs with eight β-strands. Six aromatic pairs (four Tyr/Tyr, one Tyr/Phe and one Phe/Phe) are present in the β-hairpin sequences of the Greek keys. Ultraviolet damage to the aromatic residues in lens crystallins may contribute to the genesis of cataract. Mutant proteins with these aromatic residues substituted with alanines were constructed and expressed in E. coli. All mutant proteins except F115A and F117A had lower thermal stability than the WT protein. In equilibrium experiments in guanidine hydrochloride (GuHCl), all mutant proteins had lower thermodynamic stability than the WT protein. N-terminal domain (N-td) substitutions shifted the N-td transition to lower GuHCl concentration, but the C-terminal domain (C-td) transition remained unaffected. C-td substitutions led to a more cooperative unfolding/refolding process, with both the N-td and C-td transitions shifted to lower GuHCl concentration. The aromatic pairs conserved for each Greek key motif (Greek key pairs) had larger contributions to both thermal stability and thermodynamic stability than the other pairs. Aromatic-aromatic interaction was estimated as 1.5-2.0 kcal/mol. In kinetic experiments, N-td substitutions accelerated the early phase of unfolding, while C-td substitutions accelerated the late phase, suggesting independent domain unfolding. Only substitutions of the second Greek key pair of each crystallin domain slowed refolding. The second Greek keys may provide nucleation sites during the folding of the double-Greek-key crystallin domains.

Indexed as

Protein FoldingProtein StabilityProtein Structure, SecondaryProtein Structure, Tertiarygamma-CrystallinsHumansModels, MolecularMutant ProteinsProtein DenaturationTemperatureCRYGD protein, humangamma-CrystallinsMutant Proteins

Identifiers

PMID21432932
PMCPMC3064831
OpenAlexW2114596895

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.