ArticleMethods in molecular biology (Clifton, N.J.)2011
Identifying and searching for conserved RNA localisation signals.
Article in Methods in molecular biology (Clifton, N.J.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- High-throughput identification of RNA localization elements in neuronal cells.Nucleic acids research · 2022Article
- Peroxisome function relies on organelle-associated mRNA translation.Science advances · 2022Article
- Article
- A secretion-enhancing cis regulatory targeting element (SECReTE) involved in mRNA localization and protein synthesis.PLoS genetics · 2019Article
- Translational co-regulation of a ligand and inhibitor by a conserved RNA element.Nucleic acids research · 2018Article
- Multifunctional RNA Binding Protein OsTudor-SN in Storage Protein mRNA Transport and Localization.Plant physiology · 2017Article
- Evolution of the unspliced transcriptome.BMC evolutionary biology · 2015Article
- Multifunctional roles for the protein translocation machinery in RNA anchoring to the endoplasmic reticulum.The Journal of biological chemistry · 2014Article
- Analogue encoding of physicochemical properties of proteins in their cognate messenger RNAs.Nature communications · 2013Article
- Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes.Nucleic acids research · 2012Article
- Identification of a cis-acting element that localizes mRNA to synapses.Proceedings of the National Academy of Sciences of the United States of America · 2012Article
- Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives.Frontiers in plant science · 2011Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
RNA localisation is an important mode of delivering proteins to their site of function. Cis-acting signals within the RNAs, which can be thought of as zip-codes, determine the site of localisation. There are few examples of fully characterised RNA signals, but the signals are thought to be defined through a combination of primary, secondary, and tertiary structures. In this chapter, we describe a selection of computational methods for predicting RNA secondary structure, identifying localisation signals, and searching for similar localisation signals on a genome-wide scale. The chapter is aimed at the biologist rather than presenting the details of each of the individual methods.
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