Evidence map›Paper›PMID 21430775›Full record

ArticleNature2011

Initial genome sequencing and analysis of multiple myeloma.

Michael A Chapman, Michael S Lawrence, Jonathan J Keats, Kristian Cibulskis, Carrie Sougnez, Anna C Schinzel, Christina L Harview, Jean-Philippe Brunet, Gregory J Ahmann, Mazhar Adli and 40 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03421132 (The Terry Fox Pan-Canadian Multiple Myeloma Molecular Monitoring Study), which is not on this map. Cited by 874 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
874citing papers in PubMed, 1 pooled it
90.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03421132 active not recruitingnot on this mapstarted 2018, after this paper: background citation

The Terry Fox Pan-Canadian Multiple Myeloma Molecular Monitoring Study

TypeobservationalSponsorHorizon Health NetworkRan2018 to 2026Enrolled96ConditionsMultiple Myeloma
3 · Its place in the literature

Who cites it

874 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,437 citations in OpenAlex.

  1. Pooled it
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814 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

50 authors at 17 institutions in 4 countries.

Michael A ChapmanThe Eli and Edythe L. Broad Institute, 7 Cambridge Center, Cambridge, Massachusetts 02412, USA.
Michael S Lawrence
Jonathan J Keats
Kristian Cibulskis
Carrie Sougnez
Anna C Schinzel
Christina L Harview
Jean-Philippe Brunet
Gregory J Ahmann
Mazhar Adli
Kenneth C Anderson
Kristin G Ardlie
Daniel Auclair
Angela Baker
P Leif Bergsagel
Bradley E Bernstein
Yotam Drier
Rafael Fonseca
Stacey B Gabriel
Craig C Hofmeister
Sundar Jagannath
Andrzej J Jakubowiak
Amrita Krishnan
Joan Levy
Ted Liefeld
Sagar Lonial
Scott Mahan
Bunmi Mfuko
Stefano Monti
Louise M Perkins
Robb Onofrio
Trevor J Pugh
S Vincent Rajkumar
Alex H Ramos
David S Siegel
Andrey Sivachenko
A Keith Stewart
Suzanne Trudel
Ravi Vij
Douglas Voet
Wendy Winckler
Todd Zimmerman
John Carpten
Jeff Trent
William C Hahn
Levi A Garraway
Matthew Meyerson
Eric S Lander
Gad Getz
Todd R Golub
Eli and Edythe Broad Foundation · USBroad Institute · USMultiple Myeloma Research Foundation · USMayo Clinic · USTranslational Genomics Research Institute · USHarvard University Press · USWinnMed · USCity of Hope · USDana-Farber Cancer Institute · USEmory Healthcare · USFaculty of 1000 (United States) · USHoward Hughes Medical Institute · USMayo Clinic in Arizona · USPrincess Margaret Cancer Centre · CARutgers, The State University of New Jersey · USUniversity of Chicago · USWashington University in St. Louis · US

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Translational Training Grant in Experimental TherapeuticsK12CA133250 · NCI · OHIO STATE UNIVERSITY · PI WILLIAM E. CARSON, Rosa Lapalombella · 2008 to 2026
$15.0M
Mouse models of age-associated monoclonal gammopathyR01AG020686 · NIA · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BERGSAGEL, PETER LEIF · 2003 to 2014
$3.3M
Molecular Pathogenesis of Multiple MyelomaR01CA133966 · NCI · MAYO CLINIC ARIZONA · PI BERGSAGEL, PETER LEIF · 2009 to 2013
$1.6M
A Genome Wide RNAi Vulnerability Map for MyelomaR01CA133115 · NCI · MAYO CLINIC ARIZONA · PI STEWART, ALEXANDER KEITH · 2008 to 2012
$1.3M
NCI NIH HHS K12 CA133250NCI NIH HHS R01 CA133115NCI NIH HHS R01 CA133966NHGRI NIH HHS U54 HG003067NIA NIH HHS R01 AG020686
6 · The paper itself

Abstract

Multiple myeloma is an incurable malignancy of plasma cells, and its pathogenesis is poorly understood. Here we report the massively parallel sequencing of 38 tumour genomes and their comparison to matched normal DNAs. Several new and unexpected oncogenic mechanisms were suggested by the pattern of somatic mutation across the data set. These include the mutation of genes involved in protein translation (seen in nearly half of the patients), genes involved in histone methylation, and genes involved in blood coagulation. In addition, a broader than anticipated role of NF-κB signalling was indicated by mutations in 11 members of the NF-κB pathway. Of potential immediate clinical relevance, activating mutations of the kinase BRAF were observed in 4% of patients, suggesting the evaluation of BRAF inhibitors in multiple myeloma clinical trials. These results indicate that cancer genome sequencing of large collections of samples will yield new insights into cancer not anticipated by existing knowledge.

Indexed as

Amino Acid SequenceBlood CoagulationCpG IslandsDNA Mutational AnalysisDNA RepairExonsExosome Multienzyme Ribonuclease ComplexGenome, HumanGenomicsHistonesHomeodomain ProteinsHomeostasisHumansMethylationModels, MolecularMolecular Sequence DataBRAF protein, humanDIS3 protein, humanExosome Multienzyme Ribonuclease ComplexHistoneshomeobox protein HOXA9Homeodomain ProteinsNF-kappa BProto-Oncogene Proteins B-rafRibonucleases

Identifiers

PMID21430775
PMCPMC3560292
OpenAlexW2101035019

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.