Evidence map›Paper›PMID 21430154›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2011

An RNA interference-based screen of transcription factor genes identifies pathways necessary for sensory regeneration in the avian inner ear.

David M Alvarado, R David Hawkins, Stavros Bashiardes, Rose A Veile, Yuan-Chieh Ku, Kara E Powder, Meghan K Spriggs, Judith D Speck, Mark E Warchol, Michael Lovett

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Hair Cell Regeneration: From Animals to Humans.Clinical and experimental otorhinolaryngology · 2024
    Review
  3. Review
  4. Regeneration in the Auditory Organ in Cuban and African Dwarf Crocodiles (Frontiers in cell and developmental biology · 2022
    Article
  5. Stem Cells and the Bird Cochlea-Where Is Everybody?Cold Spring Harbor perspectives in medicine · 2019
    Review
  6. Aminoglycoside Damage and Hair Cell Regeneration in the Chicken Utricle.Journal of the Association for Research in Otolaryngology : JARO · 2018
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Gene-expression analysis of hair cell regeneration in the zebrafish lateral line.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. The transcriptome of utricle hair cell regeneration in the avian inner ear.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  13. Article
  14. Article
  15. Generation of hair cells in neonatal mice by β-catenin overexpression in Lgr5-positive cochlear progenitors.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

David M AlvaradoDivision of Human Genetics, Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63110, USA.
R David Hawkins
Stavros Bashiardes
Rose A Veile
Yuan-Chieh Ku
Kara E Powder
Meghan K Spriggs
Judith D Speck
Mark E Warchol
Michael Lovett
Washington University in St. Louis · USCentral Institute for the Deaf · US

Funding

Sensory Function CoreP30DC004665 · NIDCD · WASHINGTON UNIVERSITY · PI FADDIS, BRIAN T · 2001 to 2015
$8.0M
MECHANISMS OF SENSORY REGENERATIONR01DC006283 · NIDCD · WASHINGTON UNIVERSITY · PI WARCHOL, MARK · 2004 to 2025
$6.8M
Gene Expression Profiling of the Development Inner EarR01DC005632 · NIDCD · WASHINGTON UNIVERSITY · PI LOVETT, MICHAEL · 2003 to 2006
$1.2M
Genomic approaches to inner ear hair cell regenerationRC1DC010677 · NIDCD · WASHINGTON UNIVERSITY · PI LOVETT, MICHAEL · 2009 to 2010
$996k
NIDCD NIH HHS P30 DC004665NIDCD NIH HHS P30DC04665NIDCD NIH HHS R01 DC005632NIDCD NIH HHS R01DC005632NIDCD NIH HHS R01 DC006283NIDCD NIH HHS R01DC006283NIDCD NIH HHS RC1 DC010677
6 · The paper itself

Abstract

Sensory hair cells of the inner ear are the mechanoelectric transducers of sound and head motion. In mammals, damage to sensory hair cells leads to hearing or balance deficits. Nonmammalian vertebrates such as birds can regenerate hair cells after injury. In a previous study, we characterized transcription factor gene expression during chicken hair cell regeneration. In those studies, a laser microbeam or ototoxic antibiotics were used to damage the sensory epithelia (SE). The current study focused on 27 genes that were upregulated in regenerating SEs compared to untreated SEs in the previous study. Those genes were knocked down by siRNA to determine their requirement for supporting cell proliferation and to measure resulting changes in the larger network of gene expression. We identified 11 genes necessary for proliferation and also identified novel interactive relationships between many of them. Defined components of the WNT, PAX, and AP1 pathways were shown to be required for supporting cell proliferation. These pathways intersect on WNT4, which is also necessary for proliferation. Among the required genes, the CCAAT enhancer binding protein, CEBPG, acts downstream of Jun Kinase and JUND in the AP1 pathway. The WNT coreceptor LRP5 acts downstream of CEBPG, as does the transcription factor BTAF1. Both of these genes are also necessary for supporting cell proliferation. This is the first large-scale screen of its type and suggests an important intersection between the AP1 pathway, the PAX pathway, and WNT signaling in the regulation of supporting cell proliferation during inner ear hair cell regeneration.

Indexed as

AnimalsCCAAT-Binding FactorCell ProliferationChickensEar, InnerEpitheliumGene Knockdown TechniquesHair Cells, Auditory, InnerJNK Mitogen-Activated Protein KinasesLasersMicroarray AnalysisNerve RegenerationPaxillinRNA InterferenceSaccule and UtricleSignal TransductionCCAAT-Binding FactorJNK Mitogen-Activated Protein KinasesPaxillinTranscription Factor AP-1Transcription FactorsTranscription Factor TFIIDWnt4 ProteinWNT4 protein, humanWnt Proteins

Identifiers

PMID21430154
PMCPMC3086586
OpenAlexW2077158316

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.