Evidence map›Paper›PMID 21427361›Full record

ArticlePhysiological genomics2011

Alterations in the proteome of the NHERF2 knockout mouse jejunal brush border membrane vesicles.

M Donowitz, S Singh, P Singh, M Chakraborty, Y Chen, R Murtazina, M Gucek, R N Cole, N C Zachos, F F Salahuddin and 10 more

Abstract read
In one paragraph

Article in Physiological genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Both NHERF3 and NHERF2 are necessary for multiple aspects of acute regulation of NHE3 by elevated CaAmerican journal of physiology. Gastrointestinal and liver physiology · 2018
    Article
  4. Small intestinal ion transport.Current opinion in gastroenterology · 2012
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 4 countries.

M DonowitzDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205-2195, USA. mdonowit@jhmi.edu
S Singh
P Singh
M Chakraborty
Y Chen
R Murtazina
M Gucek
R N Cole
N C Zachos
F F Salahuddin
O Kovbasnjuk
N Broere
W G Smalley-Freed
A B Reynolds
A L Hubbard
U Seidler
E Weinman
H R de Jonge
B M Hogema
X Li
Immunovaccine (Canada) · CAErasmus MC · NLVanderbilt University · USJohns Hopkins Medicine · USMedizinische Hochschule Hannover · DEUniversity of Maryland, Baltimore · US

Funding

Proteomics CoreZICHL005903 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI GUCEK, MARJAN · 2009 to 2022
$23.3M
Two-Photon Microscopy Imaging CoreP01DK072084 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI HUBBARD, ANN · 2006 to 2013
$12.7M
DIARRHEAL DISEASES: A PHYSIOLOGIC APPROACH TO TREATMENTR01DK026523 · NIDDK · TUFTS MEDICAL CENTER · PI DONOWITZ, MARK · 1986 to 2016
$7.8M
PDZ Domain Proteins and NHE3 RegulationR01DK061765 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK, TSE, CHUNG-MING · 2004 to 2013
$4.7M
Hopkins Digestive Diseases Research Development CenterR24DK064388 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 2003 to 2010
$4.6M
PLCgamma regulates HNE3 activity through direct binding and dynamic complexesK01DK080930 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ZACHOS, NICHOLAS CONSTANTINE · 2008 to 2011
$587k
Intracellular Calcium Regulated NHE3 EndocytosisR03DK091482 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ZACHOS, NICHOLAS CONSTANTINE · 2011 to 2012
$164k
NIDDK NIH HHS K01 DK080930NIDDK NIH HHS P01-DK72084NIDDK NIH HHS R01 DK061765NIDDK NIH HHS R01-DK26523NIDDK NIH HHS R01-DK61765NIDDK NIH HHS R03 DK091482NIDDK NIH HHS R24-DK64388
6 · The paper itself

Abstract

To identify additional potential functions for the multi-PDZ domain containing protein Na+/H+ exchanger regulatory factor 2 (NHERF2), which is present in the apical domain of intestinal epithelial cells, proteomic studies of mouse jejunal villus epithelial cell brush border membrane vesicles compared wild-type to homozygous NHERF2 knockout FVB mice by a two-dimensional liquid chromatography-tandem mass spectrometry (LC-MS/MS)-iTRAQ approach. Jejunal architecture appeared normal in NHERF2 null in terms of villus length and crypt depth, Paneth cell number, and microvillus structure by electron microscopy. There was also no change in proliferative activity based on BrdU labeling. Four brush border membrane vesicles (BBMV) preparations from wild-type mouse jejunum were compared with four preparations from NHERF2 knockout mice. LC-MS/MS identified 450 proteins in both matched wild-type and NHERF2 null BBMV; 13 proteins were changed in two or more separate BBMV preparations (9 increased and 4 decreased in NHERF2 null mice), while an additional 92 proteins were changed in a single BBMV preparation (68 increased and 24 decreased in NHERF2 null mice). These proteins were categorized as 1) transport proteins (one increased and two decreased in NHERF2 null); 2) signaling molecules (2 increased in NHERF2 null); 3) cytoskeleton/junctional proteins (4 upregulated and 1 downregulated in NHERF2 null); and 4) metabolic proteins/intrinsic BB proteins) (2 upregulated and 1 downregulated in NHERF2 null). Immunoblotting of BBMV was used to validate or extend the findings, demonstrating increase in BBMV of NHERF2 null of MCT1, coronin 3, and ezrin. The proteome of the NHERF2 null mouse small intestinal BB demonstrates up- and downregulation of multiple transport proteins, signaling molecules, cytoskeletal proteins, tight junctional and adherens junction proteins, and proteins involved in metabolism, suggesting involvement of NHERF2 in multiple apical regulatory processes and interactions with luminal contents.

Indexed as

Animalsbeta CateninCadherinsCell ProliferationChromatography, LiquidCytoskeletonDown-RegulationFluorescent Antibody TechniqueJejunumMaleMiceMice, KnockoutMicrovilliPhosphoproteinsProteomeSodium-Hydrogen Exchangersbeta CateninCadherinsPhosphoproteinsProteomesodium-hydrogen exchanger regulatory factorSodium-Hydrogen Exchangers

Identifiers

PMID21427361
PMCPMC3121161
OpenAlexW2127960844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.