ArticleFEMS microbiology ecology2011
Rice root-associated bacteria: insights into community structures across 10 cultivars.
Article in FEMS microbiology ecology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed.
- Characterization of culturable endophytes and microbial communities in the rhizosphere and pitcher fluid of the carnivorous plant Nepenthes khasiana.Archives of microbiology · 2026Article
- Comparative Insights into Bacterial Endophytome and Antifungal Metabolites inPathogens (Basel, Switzerland) · 2026Article
- Culturable endophytic bacteria associated with zinc accumulation difference in rice genotypes.World journal of microbiology & biotechnology · 2026Article
- Tea Cultivar Genotype Shapes Rhizosphere Microbiome Assembly Through Metabolic Differentiation.Plants (Basel, Switzerland) · 2026Article
- The quest for molecular markers indicating root growth in microbially treated tomato (Solanum lycopersicum) plants.FEMS microbiology ecology · 2025Article
- Comparative genomics-based insights intoApplied and environmental microbiology · 2024Article
- Changes in the rhizosphere and root-associated bacteria community of white Guinea yam (Heliyon · 2024Article
- Epiphytic and endophytic bacteria on Camellia oleifera phyllosphere: exploring region and cultivar effect.BMC ecology and evolution · 2024Article
- The Characteristics of the Root-Zone Soil's Biological Properties and Microbial Community Structure in Grafted Star Anise Plantations.Microorganisms · 2024Article
- Microbe-Responsive Proteomes During Plant-Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20.Rice (New York, N.Y.) · 2023Article
- Metagenomic and machine learning-aided identification of biomarkers driving distinctive Cd accumulation features in the root-associated microbiome of two rice cultivars.ISME communications · 2023Article
- Vertical transfer and functional characterization of cotton seed core microbiome.Frontiers in microbiology · 2023Article
- The effect of salinity on soil chemical characteristics, enzyme activity and bacterial community composition in rice rhizospheres in Northeastern Thailand.Scientific reports · 2022Article
- Insect Gut Bacteria Promoting the Growth of Tomato Plants (International journal of molecular sciences · 2022Article
- Seasonal Effect on Bacterial Communities Associated with the Rhizospheres ofMicroorganisms · 2022Article
- Differences between the effects of plant species and compartments on microbiome composition in two halophyteBioengineered · 2022Article
- The Role of Soil Microbial Diversity in the Conservation of Native Seed Bacterial Microbiomes.Microorganisms · 2022Article
- Microbiome and pathobiome analyses reveal changes in community structure by foliar pathogen infection in rice.Frontiers in microbiology · 2022Article
- Soil microbial community assembly and stability are associated with potato (Frontiers in plant science · 2022Article
- Analysis of endophyte diversity ofPeerJ · 2022Article
19 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed by denaturing gradient gel electrophoresis (PCR-DGGE). Rice genotype determined, to a large extent, the composition of the different bacterial communities across cultivars. Several cultivars belonging to Oryza sativa ssp. indica tended to select similar bacterial communities, whereas those belonging to subspecies japonica and aromatica selected ones with divergent community structures. An effect of soil type was pronounced for the Actinobacteria communities, while a small effect of 'improved' and 'traditional' plants was noted for all communities analyzed. A few dominant bands in PCR-DGGE, affiliated with Rhizobium radiobacter, Dickeya zeae, Mycobacterium bolletii and with members of the Rhizobiales, Rhodospirillaceae and Paenibacillaceae, were spread across cultivars. In contrast, a majority of bands (e.g. affiliated with Enterobacter cloacae or Burkholderia kururiensis) was only present in particular cultivars or was erratically distributed among rice replicates. These findings suggested that both bacterial adaptation and plant genotype contribute to the shaping of the dynamic bacterial communities associated with roots of rice plants.
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