Evidence map›Paper›PMID 21424227›Full record

ArticleJournal of biomolecular NMR2011

Measuring 1HN temperature coefficients in invisible protein states by relaxation dispersion NMR spectroscopy.

Guillaume Bouvignies, Pramodh Vallurupalli, Matthew H J Cordes, D Flemming Hansen, Lewis E Kay

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. A fine balance of hydrophobic-electrostatic communication pathways in a pH-switching protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Temperature dependence of NMR chemical shifts: Tracking and statistical analysis.Protein science : a publication of the Protein Society · 2020
    Article
  5. UsingProtein science : a publication of the Protein Society · 2018
    Article
  6. Multistep mutational transformation of a protein fold through structural intermediates.Protein science : a publication of the Protein Society · 2018
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Guillaume BouvigniesDepartment of Molecular Genetics, The University of Toronto, Toronto, ON, Canada.
Pramodh Vallurupalli
Matthew H J Cordes
D Flemming Hansen
Lewis E Kay

Funding

Conformational Switching in ProteinsR01GM066806 · NIGMS · UNIVERSITY OF ARIZONA · PI CORDES, MATTHEW HJ · 2003 to 2012
$2.5M
CIHRNIGMS NIH HHS GM066806NIGMS NIH HHS R01 GM066806
6 · The paper itself

Abstract

A method based on the Carr-Purcell-Meiboom-Gill relaxation dispersion experiment is presented for measuring the temperature coefficients of amide proton chemical shifts of low populated 'invisible' protein states that exchange with a 'visible' ground state on the millisecond time-scale. The utility of the approach is demonstrated with an application to an I58D mutant of the Pfl6 Cro protein that undergoes exchange between the native, folded state and a cold denatured, unfolded conformational ensemble that is populated at a level of 6% at 2.5°C. A wide distribution of amide temperature coefficients is measured for the unfolded state. The distribution is centered about -5.6 ppb/K, consistent with an absence of intra-molecular hydrogen bonds, on average. However, the large range of values (standard deviation of 2.1 ppb/K) strongly supports the notion that the unfolded state of the protein is not a true random coil polypeptide chain.

Indexed as

ProtonsTemperatureHydrogen BondingModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationProteinsProteinsProtons

Identifiers

PMID21424227
PMCPMC3229278

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.