Evidence map›Paper›PMID 21423617›Full record

ArticlePloS one2011

Cross-sample validation provides enhanced proteome coverage in rat vocal fold mucosa.

Nathan V Welham, Masaru Yamashita, Seong Hee Choi, Changying Ling

Erratum issuedOpen access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  8. Fundamental approaches in molecular biology for communication sciences and disorders.Journal of speech, language, and hearing research : JSLHR · 2012
    Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nathan V WelhamDepartment of Surgery, Division of Otolaryngology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America. welham@sugery.wisc.edu
Masaru Yamashita
Seong Hee Choi
Changying Ling
University of Wisconsin–Madison · US

Funding

Regeneration of Multi-Layered Vocal Fold MucosaR01DC010777 · NIDCD · UNIVERSITY OF WISCONSIN-MADISON · PI WELHAM, NATHAN · 2010 to 2020
$5.3M
Proteomic Profiling of the Vocal Fold Extracellular MatrixR03DC008884 · NIDCD · UNIVERSITY OF WISCONSIN-MADISON · PI WELHAM, NATHAN · 2007 to 2009
$258k
NIDCD NIH HHS R01 DC010777NIDCD NIH HHS R01 DC10777NIDCD NIH HHS R03 DC008884NIDCD NIH HHS R03 DC008884-S1
6 · The paper itself

Abstract

The vocal fold mucosa is a biomechanically unique tissue comprised of a densely cellular epithelium, superficial to an extracellular matrix (ECM)-rich lamina propria. Such ECM-rich tissues are challenging to analyze using proteomic assays, primarily due to extensive crosslinking and glycosylation of the majority of high M(r) ECM proteins. In this study, we implemented an LC-MS/MS-based strategy to characterize the rat vocal fold mucosa proteome. Our sample preparation protocol successfully solubilized both proteins and certain high M(r) glycoconjugates and resulted in the identification of hundreds of mucosal proteins. A straightforward approach to the treatment of protein identifications attributed to single peptide hits allowed the retention of potentially important low abundance identifications (validated by a cross-sample match and de novo interpretation of relevant spectra) while still eliminating potentially spurious identifications (global single peptide hits with no cross-sample match). The resulting vocal fold mucosa proteome was characterized by a wide range of cellular and extracellular proteins spanning 12 functional categories.

Indexed as

AnimalsChromatography, LiquidExtracellular Matrix ProteinsImmunohistochemistryLaryngeal MucosaMaleMass SpectrometryPeptidesProteomeRatsRats, Sprague-DawleyReproducibility of ResultsVocal CordsExtracellular Matrix ProteinsPeptidesProteome

Identifiers

PMID21423617
PMCPMC3057991
OpenAlexW1981484798

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.