Evidence map›Paper›PMID 21423604›Full record

ArticlePloS one2011

Oligosaccharide binding proteins from Bifidobacterium longum subsp. infantis reveal a preference for host glycans.

Daniel Garrido, Jae Han Kim, J Bruce German, Helen E Raybould, David A Mills

4 registry-linked trialsOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 4 registered trials, which are not on this map. Cited by 124 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 1 pooled it
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01817127 active not recruitingnot on this map

Functional Deconstruction of Human Milk Oligosaccharides and Lipids

TypeobservationalSponsorUniversity of California, DavisRan2009 to 2028Enrolled395ConditionsHealthy, Gestational Diabetes Mellitus, Type 2 Diabetes Mellitus
NCT02457338 naactive not recruitingnot on this mapstarted 2014, after this paper: background citation

Infant Supplementation With Probiotic Bifidobacterium Longum Subsp. Infantis Study

TypeinterventionalSponsorUniversity of California, DavisRan2014 to 2027Enrolled120ConditionsHealthyArmsBifidobacterium
NCT03222804 nawithdrawnnot on this mapstarted 2017, after this paper: background citation

Establishing a Milk Oriented Microbiota in Healthy Term Infants

TypeinterventionalSponsorUniversity of California, DavisRan2017 to 2017Enrolled0ConditionsMicrobial ColonizationArmsBifidobacterium
NCT03229863 naactive not recruitingnot on this mapstarted 2017, after this paper: background citation

The Infant MiND Study: An Examination of Infants' Microbiome, Nutrition, and Development Study.

TypeinterventionalSponsorUniversity of California, DavisRan2017 to 2027Enrolled102ConditionsMicrobial Colonization, Infant DevelopmentArmsSweet Potatos, Pears
3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 1 synthesis or guideline pooled it, 215 citations in OpenAlex.

  1. Pooled it
  2. Observational
  3. Article
  4. Article
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  6. Article
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  14. Impact ofNutrients · 2024
    Review
  15. Review
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  18. Review
  19. Review
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel GarridoDepartment of Food Science and Technology, University of California Davis, Davis, California, United States of America.
Jae Han Kim
J Bruce German
Helen E Raybould
David A Mills
University of California, Davis · US

Funding

Structures, Functions, & Genetic Diversity of Oligosaccharides in MilkR01HD061923 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B · 2009 to 2013
$1.6M
NICHD NIH HHS 1R01HD061923NICHD NIH HHS R01 HD061923
6 · The paper itself

Abstract

Bifidobacterium longum subsp. infantis (B. infantis) is a common member of the infant intestinal microbiota, and it has been characterized by its foraging capacity for human milk oligosaccharides (HMO). Its genome sequence revealed an overabundance of the Family 1 of solute binding proteins (F1SBPs), part of ABC transporters and associated with the import of oligosaccharides. In this study we have used the Mammalian Glycan Array to determine the specific affinities of these proteins. This was correlated with binding protein expression induced by different prebiotics including HMO. Half of the F1SBPs in B. infantis were determined to bind mammalian oligosaccharides. Their affinities included different blood group structures and mucin oligosaccharides. Related to HMO, other proteins were specific for oligomers of lacto-N-biose (LNB) and polylactosamines with different degrees of fucosylation. Growth on HMO induced the expression of specific binding proteins that import HMO isomers, but also bind blood group and mucin oligosaccharides, suggesting coregulated transport mechanisms. The prebiotic inulin induced other family 1 binding proteins with affinity for intestinal glycans. Most of the host glycan F1SBPs in B. infantis do not have homologs in other bifidobacteria. Finally, some of these proteins were found to be adherent to intestinal epithelial cells in vitro. In conclusion, this study represents further evidence for the particular adaptations of B. infantis to the infant gut environment, and helps to understand the molecular mechanisms involved in this process.

Indexed as

Bacterial ProteinsBifidobacteriumCaco-2 CellsEpithelial CellsFlow CytometryGene Expression Regulation, BacterialHumansInulinMicroscopy, ConfocalMilk, HumanOligosaccharidesPolysaccharidesPrebioticsProtein BindingProteomicsReceptors, Cell SurfaceBacterial ProteinsInulinOligosaccharidesPolysaccharidesPrebioticsReceptors, Cell Surfacesaccharide-binding proteins

Identifiers

PMID21423604
PMCPMC3057974
OpenAlexW2055379078

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.