Evidence map›Paper›PMID 21423179›Full record

ArticleNature genetics2011

Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach.

Belinda Giardine, Joseph Borg, Douglas R Higgs, Kenneth R Peterson, Sjaak Philipsen, Donna Maglott, Belinda K Singleton, David J Anstee, A Nazli Basak, Barnaby Clark and 41 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 160 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The hemoglobinopathies, molecular disease mechanisms and diagnostics.International journal of laboratory hematology · 2022
    Review
  7. Prime Editor 3 Mediated Beta-Thalassemia Mutations of theInternational journal of molecular sciences · 2022
    Article
  8. Breakpoint characterization of a rare alphaInternational journal of laboratory hematology · 2021
    Article
  9. Article
  10. Article
  11. Compounded with hemoglobin Port Phillip and -αMolecular genetics & genomic medicine · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Modulating gene regulation to treat genetic disorders.Nature reviews. Drug discovery · 2020
    Review
  17. Article
  18. Article
  19. Non-deletional alpha thalassaemia: a review.Orphanet journal of rare diseases · 2020
    Review
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

51 authors at 20 institutions in 13 countries.

Belinda GiardinePennsylvania State University, Center for Comparative Genomics and Bioinformatics, University Park, Philadelphia, Pennsylvania, USA.
Joseph Borg
Douglas R Higgs
Kenneth R Peterson
Sjaak Philipsen
Donna Maglott
Belinda K Singleton
David J Anstee
A Nazli Basak
Barnaby Clark
Flavia C Costa
Paula Faustino
Halyna Fedosyuk
Alex E Felice
Alain Francina
Renzo Galanello
Monica V E Gallivan
Marianthi Georgitsi
Richard J Gibbons
Piero C Giordano
Cornelis L Harteveld
James D Hoyer
Martin Jarvis
Philippe Joly
Emmanuel Kanavakis
Panagoula Kollia
Stephan Menzel
Webb Miller
Kamran Moradkhani
John Old
Adamantia Papachatzopoulou
Manoussos N Papadakis
Petros Papadopoulos
Sonja Pavlovic
Lucia Perseu
Milena Radmilovic
Cathy Riemer
Stefania Satta
Iris Schrijver
Maja Stojiljkovic
Swee Lay Thein
Jan Traeger-Synodinos
Ray Tully
Takahito Wada
John S Waye
Claudia Wiemann
Branka Zukic
David H K Chui
Henri Wajcman
Ross C Hardison
George P Patrinos
Pennsylvania State University · USUniversity of Belgrade · RSKing's College London · GBNational and Kapodistrian University of Athens · GRUniversity of Kansas Medical Center · USUniversity of Patras · GRErasmus MC · NLHôpital Albert-Chenevier · FRHôpital Edouard Herriot · FRLeiden University Medical Center · NLMater Dei Hospital · MTMRC Weatherall Institute of Molecular Medicine · GBUniversity of Cagliari · ITBoğaziçi University · TRBoston University · USChurchill Hospital · GBInstitute of Genetic and Biomedical Research · ITKanagawa Children's Medical Center · JPLaiko General Hospital of Athens · GRMayo Clinic · US

Funding

EDAC: ENCODE Data Analysis CenterU01HG004695 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN · 2008 to 2012
$6.4M
Global Predictions and Tests of Erythroid RegulationR01DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BLOBEL, GERD A, CHIAROMONTE, FRANCESCA · 2004 to 2013
$5.3M
Enhance human ENCODE by function comparisons to mouseRC2HG005573 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI HARDISON, ROSS C · 2009 to 2011
$2.2M
Molecular basis of human gamma-globin gene activation.R01HL073455 · NHLBI · ERASMUS MEDICAL CENTER · PI GROSVELD, FRANKLIN G · 2003 to 2006
$859k
Using Biomarkers to Understand the HIV Epidemic in a Community Sample of Black MSMR21AI120777 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MATTHEWS, DERRICK DESHUN · 2015 to 2016
$424k
Medical Research Council G0000111Medical Research Council MC_U137961147NHGRI NIH HHS RC2 HG005573NHGRI NIH HHS RC HG005573NHGRI NIH HHS U01 HG004695NHLBI NIH HHS R01-HL073455NIAID NIH HHS R21 AI120777NIDDK NIH HHS R01 DK065806NIDDK NIH HHS R01-DK065806NIMHD NIH HHS L60 MD009167
6 · The paper itself

Abstract

We developed a series of interrelated locus-specific databases to store all published and unpublished genetic variation related to hemoglobinopathies and thalassemia and implemented microattribution to encourage submission of unpublished observations of genetic variation to these public repositories. A total of 1,941 unique genetic variants in 37 genes, encoding globins and other erythroid proteins, are currently documented in these databases, with reciprocal attribution of microcitations to data contributors. Our project provides the first example of implementing microattribution to incentivise submission of all known genetic variation in a defined system. It has demonstrably increased the reporting of human variants, leading to a comprehensive online resource for systematically describing human genetic variation in the globin genes and other genes contributing to hemoglobinopathies and thalassemias. The principles established here will serve as a model for other systems and for the analysis of other common and/or complex human genetic diseases.

Indexed as

Databases, GeneticGenetic VariationBase SequenceData MiningDNAGenome, HumanHemoglobinopathiesHemoglobinsHuman Genome ProjectHumansMolecular Sequence DataMutationPromoter Regions, GeneticPublishingDNAHemoglobins

Identifiers

PMID21423179
PMCPMC3878152
OpenAlexW2122484762

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.