Evidence map›Paper›PMID 21422176›Full record

ArticleInfection and immunity2011

Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization.

Andrew J Fabich, Mary P Leatham, Joe E Grissom, Graham Wiley, Hongshing Lai, Fares Najar, Bruce A Roe, Paul S Cohen, Tyrrell Conway

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Andrew J FabichAdvanced Center for Genome Technology, Department of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA.
Mary P Leatham
Joe E Grissom
Graham Wiley
Hongshing Lai
Fares Najar
Bruce A Roe
Paul S Cohen
Tyrrell Conway
University of Oklahoma · USUniversity of Rhode Island · US

Funding

GROWTH AND COLONIZATION OF THE INTESTINE BY E COLIR01AI048945 · NIAID · UNIVERSITY OF OKLAHOMA NORMAN · PI CONWAY, TYRRELL · 2000 to 2008
$3.4M
Symbiosis of E. coli and the Intestinal Microbiota in a Mouse ModelR01GM095370 · NIGMS · UNIVERSITY OF OKLAHOMA · PI CONWAY, TYRRELL · 2011 to 2014
$1.6M
Growth and Colonization of the Intestine by E. coliR56AI048945 · NIAID · UNIVERSITY OF OKLAHOMA · PI CONWAY, TYRRELL · 2009 to 2009
$462k
NIAID NIH HHS AI48945NIAID NIH HHS R01 AI048945NIAID NIH HHS R56 AI048945NIGMS NIH HHS GM095370NIGMS NIH HHS R01 GM095370
6 · The paper itself

Abstract

We previously isolated a spontaneous mutant of Escherichia coli K-12, strain MG1655, following passage through the streptomycin-treated mouse intestine, that has colonization traits superior to the wild-type parent strain (M. P. Leatham et al., Infect. Immun. 73:8039-8049, 2005). This intestine-adapted strain (E. coli MG1655*) grew faster on several different carbon sources than the wild type and was nonmotile due to deletion of the flhD gene. We now report the results of several high-throughput genomic analysis approaches to further characterize E. coli MG1655*. Whole-genome pyrosequencing did not reveal any changes on its genome, aside from the deletion at the flhDC locus, that could explain the colonization advantage of E. coli MG1655*. Microarray analysis revealed modest yet significant induction of catabolic gene systems across the genome in both E. coli MG1655* and an isogenic flhD mutant constructed in the laboratory. Catabolome analysis with Biolog GN2 microplates revealed an enhanced ability of both E. coli MG1655* and the isogenic flhD mutant to oxidize a variety of carbon sources. The results show that intestine-adapted E. coli MG1655* is more fit than the wild type for intestinal colonization, because loss of FlhD results in elevated expression of genes involved in carbon and energy metabolism, resulting in more efficient carbon source utilization and a higher intestinal population. Hence, mutations that enhance metabolic efficiency confer a colonization advantage.

Indexed as

AnimalsBase SequenceEscherichia coli K12Genes, BacterialGenomeGenome-Wide Association StudyGenotypeIntestinesMaleMiceMolecular Sequence DataOligonucleotide Array Sequence AnalysisPhenotypeSequence Analysis

Identifiers

PMID21422176
PMCPMC3125843
OpenAlexW2061460130

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.