Evidence map›Paper›PMID 21422074›Full record

ArticleNucleic acids research2011

Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families.

Raphaël Leplae, Damien Geeraerts, Régis Hallez, Julien Guglielmini, Pierre Drèze, Laurence Van Melderen

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 242 papers.

0numbers the graph read from it
0cells of the map it votes in
242citing papers in PubMed
21.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

242 citing papers in PubMed, 397 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Structural mechanism of SAM-AMP and SAM-AMPNature communications · 2026
    Article
  5. Article
  6. Insights into toxin-antitoxin systems in the genusApplied and environmental microbiology · 2025
    Review
  7. NovelInternational journal of molecular sciences · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Type II Toxin-Antitoxin Systems inInfection and drug resistance · 2025
    Review
  15. Review
  16. RES-Xre toxin-antitoxin locusEmerging microbes & infections · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Article

182 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Raphaël LeplaeLaboratoire de Bioinformatique des Génomes et des Réseaux (BiGRe), Faculté des Sciences, Université Libre de Bruxelles, Bld du Triomphe, 1050 Bruxelles, Belgium.
Damien Geeraerts
Régis Hallez
Julien Guglielmini
Pierre Drèze
Laurence Van Melderen
Université Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type II toxin-antitoxin (TA) systems are generally composed of two genes organized in an operon, encoding a labile antitoxin and a stable toxin. They were first discovered on plasmids where they contribute to plasmid stability by a phenomenon denoted as 'addiction', and subsequently in bacterial chromosomes. To discover novel families of antitoxins and toxins, we developed a bioinformatics approach based on the 'guilt by association' principle. Extensive experimental validation in Escherichia coli of predicted antitoxins and toxins increased significantly the number of validated systems and defined novel toxin and antitoxin families. Our data suggest that toxin families as well as antitoxin families originate from distinct ancestors that were assembled multiple times during evolution. Toxin and antitoxin families found on plasmids tend to be promiscuous and widespread, indicating that TA systems move through horizontal gene transfer. We propose that due to their addictive properties, TA systems are likely to be maintained in chromosomes even though they do not necessarily confer an advantage to their bacterial hosts. Therefore, addiction might play a major role in the evolutionary success of TA systems both on mobile genetic elements and in bacterial chromosomes.

Indexed as

Bacterial ProteinsBacterial ToxinsEscherichia coliEvolution, MolecularGenetic VariationGenome, BacterialGenomicsBacterial ProteinsBacterial Toxins

Identifiers

PMID21422074
PMCPMC3141249
OpenAlexW1986703858

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.