Evidence map›Paper›PMID 21421109›Full record

ReviewSeminars in oncology2011

The use of genomic information to optimize cancer chemotherapy.

Federico Innocenti, Nancy J Cox, M Eileen Dolan

Abstract readReview
In one paragraph

Review in Seminars in oncology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Observational
  4. Article
  5. Needles, Haystacks and Next-Generation Genetic Sequencing.Health matrix (Cleveland, Ohio : 1991) · 2018
    Article
  6. Review
  7. Observational
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.Clinical cancer research : an official journal of the American Association for Cancer Research · 2012
    Article
  14. Approach to epigenetic analysis in language disorders.Journal of neurodevelopmental disorders · 2011
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Federico InnocentiDepartment of Medicine, Comprehensive Cancer Center, The University of Chicago, Chicago, IL 60637, USA.
Nancy J Cox
M Eileen Dolan

Funding

Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2000 to 2014
$39.0M
Variation in Hormone and xenobiotic metabolizing enzyme genes and breast cancerP50CA125183 · NCI · UNIVERSITY OF CHICAGO · PI KRAUSZ, THOMAS · 2006 to 2010
$11.3M
Genetic determinants associated with pemetrexed response and toxicityR01CA136765 · NCI · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2009 to 2013
$1.6M
Genome-Wide molecular epidemiology of treatment outcome and cancer riskK07CA140390 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI INNOCENTI, FEDERICO · 2009 to 2013
$648k
NCI NIH HHS CA136765NCI NIH HHS K07 CA140390NCI NIH HHS K07CA140390-01NCI NIH HHS P50 CA125183NCI NIH HHS R01 CA136765NIGMS NIH HHS U01 GM061393NIGMS NIH HHS U01GM61393
6 · The paper itself

Abstract

The field of pharmacogenomics is focused on the characterization of genetic factors contributing to the response of patients to pharmacological interventions. Drug response and toxicity are complex traits; therefore the effects are likely influenced by multiple genes. The investigation of the genetic basis of drug response has evolved from a focus on single genes to relevant pathways to the entire genome. Preclinical (cell-based models) and clinical genome-wide association studies (GWAS) in oncology provide an unprecedented opportunity for a comprehensive and unbiased assessment of the heritable factors associated with drug response. The primary challenge with attempting to identify pharmacogenomic markers from clinical studies is that they require a homogeneous population of patients treated with the same dosage regimen and minimal confounding variables. Therefore, the development of cell-based models for pharmacogenomic marker identification has utility for the field since performing these types of studies in humans is difficult and costly. This review intends to provide a current report on the status of genomic studies in oncology, the methods for discovery, and implications for patient care. We present a perspective and summary of the challenges and opportunities in translating heritable genomic discoveries to patients.

Indexed as

Deoxycytidine KinaseGenome-Wide Association StudyHumansNeoplasmsPolymorphism, Single NucleotidePrecursor Cell Lymphoblastic Leukemia-LymphomaQuantitative Trait LociDeoxycytidine Kinase

Identifiers

PMID21421109
PMCPMC3076508

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.