Evidence map›Paper›PMID 21420975›Full record

ArticleJournal of molecular biology2011

The double-length tyrosyl-tRNA synthetase from the eukaryote Leishmania major forms an intrinsically asymmetric pseudo-dimer.

Eric T Larson, Jessica E Kim, Lisa J Castaneda, Alberto J Napuli, Zhongsheng Zhang, Erkang Fan, Frank H Zucker, Christophe L M J Verlinde, Frederick S Buckner, Wesley C Van Voorhis and 2 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 45 citations in OpenAlex.

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  11. Bioinformatic Analysis Reveals Archaeal tRNALife (Basel, Switzerland) · 2017
    Article
  12. Review
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  14. Article
  15. Review
  16. Article
  17. Aminoacyl-tRNA synthetases as drug targets in eukaryotic parasites.International journal for parasitology. Drugs and drug resistance · 2014
    Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Eric T LarsonMedical Structural Genomics of Pathogenic Protozoa, Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Jessica E Kim
Lisa J Castaneda
Alberto J Napuli
Zhongsheng Zhang
Erkang Fan
Frank H Zucker
Christophe L M J Verlinde
Frederick S Buckner
Wesley C Van Voorhis
Wim G J Hol
Ethan A Merritt
University of Washington · US

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01 AI067921-01NIAID NIH HHS R01 AI084004
6 · The paper itself

Abstract

The single tyrosyl-tRNA synthetase (TyrRS) gene in trypanosomatid genomes codes for a protein that is twice the length of TyrRS from virtually all other organisms. Each half of the double-length TyrRS contains a catalytic domain and an anticodon-binding domain; however, the two halves retain only 17% sequence identity to each other. The structural and functional consequences of this duplication and divergence are unclear. TyrRS normally forms a homodimer in which the active site of one monomer pairs with the anticodon-binding domain from the other. However, crystal structures of Leishmania major TyrRS show that, instead, the two halves of a single molecule form a pseudo-dimer resembling the canonical TyrRS dimer. Curiously, the C-terminal copy of the catalytic domain has lost the catalytically important HIGH and KMSKS motifs characteristic of class I aminoacyl-tRNA synthetases. Thus, the pseudo-dimer contains only one functional active site (contributed by the N-terminal half) and only one functional anticodon recognition site (contributed by the C-terminal half). Despite biochemical evidence for negative cooperativity between the two active sites of the usual TyrRS homodimer, previous structures have captured a crystallographically-imposed symmetric state. As the L. major TyrRS pseudo-dimer is inherently asymmetric, conformational variations observed near the active site may be relevant to understanding how the state of a single active site is communicated across the dimer interface. Furthermore, substantial differences between trypanosomal TyrRS and human homologs are promising for the design of inhibitors that selectively target the parasite enzyme.

Indexed as

Amino Acid SequenceCatalytic DomainCrystallography, X-RayFlavonoidsFlavonolsLeishmania majorModels, MolecularMolecular Sequence DataProtein ConformationProtein MultimerizationSequence Homology, Amino AcidTyrosineTyrosine-tRNA LigasefisetinFlavonoidsFlavonolsTyrosineTyrosine-tRNA Ligasetyrosinol

Identifiers

PMID21420975
PMCPMC3095712
OpenAlexW2022569017

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.