Evidence map›Paper›PMID 21419681›Full record

ArticleMolecular cell2011

Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease.

Elif Sarinay Cenik, Ryuya Fukunaga, Gang Lu, Robert Dutcher, Yeming Wang, Traci M Tanaka Hall, Phillip D Zamore

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 168 citations in OpenAlex.

  1. Article
  2. Article
  3. Antagonism of RNA silencing in the yellow fever mosquito,Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Biochemical and structural basis of Dicer helicase function unveiled by resurrecting ancient proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Review
  6. Article
  7. The PAZ domain ofRNA (New York, N.Y.) · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. eLife · 2024
    Article
  12. Review
  13. bioRxiv : the preprint server for biology · 2024
    Article
  14. Review
  15. Article
  16. Review
  17. Exosomes induce neurogenesis of pluripotent P19 cells.Stem cell reviews and reports · 2023
    Article
  18. Article
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Elif Sarinay CenikDepartment of Biochemistry and Molecular Pharmacology and Howard Hughes Medical Institute, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA.
Ryuya Fukunaga
Gang Lu
Robert Dutcher
Yeming Wang
Traci M Tanaka Hall
Phillip D Zamore
Howard Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

Understanding the Mechanism of RNA InterferenceR37GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2010 to 2019
$5.3M
Understanding microRNA Biogenesis and FunctionR01GM065236 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2003 to 2014
$5.0M
Understanding the Mechanism of RNA Interference (RNAi)R01GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2001 to 2009
$3.2M
Howard Hughes Medical InstituteIntramural NIH HHSNIGMS NIH HHS GM62862NIGMS NIH HHS GM65236NIGMS NIH HHS R01 GM062862NIGMS NIH HHS R01 GM065236NIGMS NIH HHS R37 GM062862
6 · The paper itself

Abstract

Drosophila Dicer-2 generates small interfering RNAs (siRNAs) from long double-stranded RNA (dsRNA), whereas Dicer-1 produces microRNAs (miRNAs) from pre-miRNA. What makes the two Dicers specific for their biological substrates? We find that purified Dicer-2 can efficiently cleave pre-miRNA, but that inorganic phosphate and the Dicer-2 partner protein R2D2 inhibit pre-miRNA cleavage. Dicer-2 contains C-terminal RNase III domains that mediate RNA cleavage and an N-terminal helicase motif, whose function is unclear. We show that Dicer-2 is a dsRNA-stimulated ATPase that hydrolyzes ATP to ADP; ATP hydrolysis is required for Dicer-2 to process long dsRNA, but not pre-miRNA. Wild-type Dicer-2, but not a mutant defective in ATP hydrolysis, can generate siRNAs faster than it can dissociate from a long dsRNA substrate. We propose that the Dicer-2 helicase domain uses ATP to generate many siRNAs from a single molecule of dsRNA before dissociating from its substrate.

Indexed as

RNA Processing, Post-TranscriptionalAdenosine DiphosphateAdenosine TriphosphateAnimalsDrosophila melanogasterDrosophila ProteinsHydrolysisKineticsMicroRNAsModels, BiologicalPhosphatesRibonuclease IIIRNA-Binding ProteinsRNA, Double-StrandedRNA HelicasesRNA, Small InterferingAdenosine DiphosphateAdenosine TriphosphateDcr-1 protein, DrosophilaDCR-2 protein, DrosophilaDrosophila ProteinsMicroRNAsPhosphatesR2D2 protein, DrosophilaRibonuclease IIIRNA-Binding ProteinsRNA, Double-StrandedRNA HelicasesRNA, Small Interfering

Identifiers

PMID21419681
PMCPMC3115569
OpenAlexW1993046596

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.