Evidence map›Paper›PMID 21418511›Full record

SynthesisAging cell2011

Genome-wide association study identifies a single major locus contributing to survival into old age; the APOE locus revisited.

Joris Deelen, Marian Beekman, Hae-Won Uh, Quinta Helmer, Maris Kuningas, Lene Christiansen, Dennis Kremer, Ruud van der Breggen, H Eka D Suchiman, Nico Lakenberg and 18 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Aging cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed, 13 pooled it
18.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 13 syntheses or guidelines pooled it, 284 citations in OpenAlex.

  1. Pooled it
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  4. APOE Alleles and Extreme Human Longevity.The journals of gerontology. Series A, Biological sciences and medical sciences · 2019
    Pooled it
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  6. Limitations and risks of meta-analyses of longevity studies.Mechanisms of ageing and development · 2017
    Pooled it
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  8. GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.The journals of gerontology. Series A, Biological sciences and medical sciences · 2015
    Pooled it
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  13. A genome-wide association study of aging.Neurobiology of aging · 2011
    Pooled it
  14. Trial
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  16. Review
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115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 4 countries.

Joris DeelenSection of Molecular Epidemiology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands.
Marian Beekman
Hae-Won Uh
Quinta Helmer
Maris Kuningas
Lene Christiansen
Dennis Kremer
Ruud van der Breggen
H Eka D Suchiman
Nico Lakenberg
Erik B van den Akker
Willemijn M Passtoors
Henning Tiemeier
Diana van Heemst
Anton J de Craen
Fernando Rivadeneira
Eco J de Geus
Markus Perola
Frans J van der Ouderaa
David A Gunn
Dorret I Boomsma
André G Uitterlinden
Kaare Christensen
Cornelia M van Duijn
Bastiaan T Heijmans
Jeanine J Houwing-Duistermaat
Rudi G J Westendorp
P Eline Slagboom
Leiden University Medical Center · NLErasmus MC · NLVrije Universiteit Amsterdam · NLFinnish Institute for Health and Welfare · FIOdense University Hospital · DKUnilever (United Kingdom) · GBUniversity of Southern Denmark · DK

Funding

TRAJECTORIES OF MORTALITY IN CAENORHABDITIS ELEGANSP01AG008761 · NIA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ROACH, DEBORAH A · 1990 to 2008
$17.5M
NIA NIH HHS P01 AG008761NIA NIH HHS P01-AG08761
6 · The paper itself

Abstract

By studying the loci that contribute to human longevity, we aim to identify mechanisms that contribute to healthy aging. To identify such loci, we performed a genome-wide association study (GWAS) comparing 403 unrelated nonagenarians from long-living families included in the Leiden Longevity Study (LLS) and 1670 younger population controls. The strongest candidate SNPs from this GWAS have been analyzed in a meta-analysis of nonagenarian cases from the Rotterdam Study, Leiden 85-plus study, and Danish 1905 cohort. Only one of the 62 prioritized SNPs from the GWAS analysis (P<1×10(-4) ) showed genome-wide significance with survival into old age in the meta-analysis of 4149 nonagenarian cases and 7582 younger controls [OR=0.71 (95% CI 0.65-0.77), P=3.39 × 10(-17) ]. This SNP, rs2075650, is located in TOMM40 at chromosome 19q13.32 close to the apolipoprotein E (APOE) gene. Although there was only moderate linkage disequilibrium between rs2075650 and the ApoE ε4 defining SNP rs429358, we could not find an APOE-independent effect of rs2075650 on longevity, either in cross-sectional or in longitudinal analyses. As expected, rs429358 associated with metabolic phenotypes in the offspring of the nonagenarian cases from the LLS and their partners. In addition, we observed a novel association between this locus and serum levels of IGF-1 in women (P=0.005). In conclusion, the major locus determining familial longevity up to high age as detected by GWAS was marked by rs2075650, which tags the deleterious effects of the ApoE ε4 allele. No other major longevity locus was found.

Indexed as

Genome, HumanAdultAgedAged, 80 and overAlzheimer DiseaseApolipoproteins ECase-Control StudiesCohort StudiesFemaleForkhead Box Protein O3Forkhead Transcription FactorsGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinkage DisequilibriumAKT1 protein, humanApolipoproteins EForkhead Box Protein O3Forkhead Transcription FactorsFOXO3 protein, humanProto-Oncogene Proteins c-akt

Identifiers

PMID21418511
PMCPMC3193372
OpenAlexW2136404471

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.