Evidence map›Paper›PMID 21417933›Full record

ReviewOligonucleotides

Oligo/polynucleotide-based gene modification: strategies and therapeutic potential.

R Geoffrey Sargent, Soya Kim, Dieter C Gruenert

Open access · greenAbstract readReview
In one paragraph

Review in Oligonucleotides. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Debugging the genetic code: non-viralCurrent opinion in biomedical engineering · 2018
    Article
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  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

R Geoffrey SargentDepartment of Otolaryngology-Head and Neck Surgery, University of California , San Francisco, California 94115, USA.
Soya Kim
Dieter C Gruenert
California Pacific Medical Center · USUniversity of California, San Francisco · USUniversity of Vermont · US

Funding

CHARACTERIZATION OF SFHR MODIFICATION OF GENOMIC HPRTR01GM075111 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRUENERT, DIETER C · 2007 to 2010
$1.3M
Generation of a CF Pig by SFHR and Nuclear TransferR21DK066403 · NIDDK · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI GRUENERT, DIETER C · 2004 to 2005
$320k
Development of a Genetic Therapy for CF in a CF RabbitR41HL080814 · NHLBI · EVERGEN BIOTECHNOLOGIES, INC. · PI GRUENERT, DIETER C · 2005 to 2005
$140k
NHLBI NIH HHS R41 HL080814NIDDK NIH HHS R21 DK066403NIGMS NIH HHS GM075111NIGMS NIH HHS GM075111-04S1NIGMS NIH HHS R01 GM075111
6 · The paper itself

Abstract

Oligonucleotide- and polynucleotide-based gene modification strategies were developed as an alternative to transgene-based and classical gene targeting-based gene therapy approaches for treatment of genetic disorders. Unlike the transgene-based strategies, oligo/polynucleotide gene targeting approaches maintain gene integrity and the relationship between the protein coding and gene-specific regulatory sequences. Oligo/polynucleotide-based gene modification also has several advantages over classical vector-based homologous recombination approaches. These include essentially complete homology to the target sequence and the potential to rapidly engineer patient-specific oligo/polynucleotide gene modification reagents. Several oligo/polynucleotide-based approaches have been shown to successfully mediate sequence-specific modification of genomic DNA in mammalian cells. The strategies involve the use of polynucleotide small DNA fragments, triplex-forming oligonucleotides, and single-stranded oligodeoxynucleotides to mediate homologous exchange. The primary focus of this review will be on the mechanistic aspects of the small fragment homologous replacement, triplex-forming oligonucleotide-mediated, and single-stranded oligodeoxynucleotide-mediated gene modification strategies as it relates to their therapeutic potential.

Indexed as

DNADNA RepairDNA, Single-StrandedGene TargetingGenetic TherapyHumansOligodeoxyribonucleotidesOligonucleotidesDNADNA, Single-StrandedOligodeoxyribonucleotidesOligonucleotidestriplex DNA

Identifiers

PMID21417933
PMCPMC3078494
OpenAlexW1969794981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.