Evidence map›Paper›PMID 21417283›Full record

ArticleBiochemistry2011

Monoclonal antibody m18 paratope leading to dual receptor antagonism of HIV-1 gp120.

Syna Kuriakose Gift, Karyn McFadden, Isaac J Zentner, Srivats Rajagopal, Mei-Yun Zhang, Dimiter S Dimitrov, Irwin M Chaiken

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Syna Kuriakose GiftDepartment of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, Pennsylvania 19102, United States.
Karyn McFadden
Isaac J Zentner
Srivats Rajagopal
Mei-Yun Zhang
Dimiter S Dimitrov
Irwin M Chaiken
Drexel University · USNational Institutes of Health · USUniversity of Hong Kong · HK

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI CRUMP, JOHN ANDREW · 2006 to 2011
$290.5M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
Antibody-based therapeutics and vaccines against AIDSZIABC011155 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DIMITROV, DIMITER S · 2009 to 2017
$2.6M
Intramural NIH HHSNIAID NIH HHS U19 AI067854NIAID NIH HHS U19AI067854-04NIGMS NIH HHS P01 GM056550NIGMS NIH HHS P01GM56550
6 · The paper itself

Abstract

We sought to identify sequences in the monoclonal antibody m18 complementarity determining regions (CDRs) that are responsible for its interaction with HIV-1 gp120 and inhibition of the envelope receptor binding sites. In the accompanying paper (DOI 10.1021/bi101160r), we reported that m18 inhibits CD4 binding through a nonactivating mechanism that, at the same time, induces conformational effects leading to inhibition of the coreceptor site. Here, we sought to define the structural elements in m18 responsible for these actions. Direct binding and competition analyses using surface plasmon resonance showed that YU-2 gp120 binding is stabilized by a broad paratope of residues in the m18 CDRs. Additionally, several m18 residues were identified for which mutants retained high affinity for gp120 but had suppressed CD4 and 17b inhibition activities. A subset of these mutants did, however, neutralize HXBc2 viral infection. The results obtained in this work demonstrate that the combined m18 paratope contains subsets of residues that are differentially important for the binding and inhibition functions of the m18 neutralizing antibody. The data also add to prior observations that high-affinity antibodies that do not inhibit monomeric gp120 receptor site interactions may still exhibit significant antiviral activity.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingBinding, CompetitiveBinding SitesCD4 AntigensComplementarity Determining RegionsEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansImmunoglobulin Fab FragmentsModels, MolecularMutationProtein BindingProtein ConformationAntibodies, MonoclonalAntibodies, NeutralizingCD4 AntigensComplementarity Determining RegionsEpitopesHIV AntibodiesHIV Envelope Protein gp120Immunoglobulin Fab Fragments

Identifiers

PMID21417283
PMCPMC3499988
OpenAlexW2090580022

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.