Evidence map›Paper›PMID 21413810›Full record

ArticleJournal of proteome research2011

Label-free proteomics and systems biology analysis of mycobacterial phagosomes in dendritic cells and macrophages.

Qingbo Li, Christopher R Singh, Shuyi Ma, Nathan D Price, Chinnaswamy Jagannath

Abstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Proteomics ofFrontiers in immunology · 2018
    Review
  3. Review
  4. Comparative Proteomics Analysis of Human Macrophages Infected with VirulentFrontiers in cellular and infection microbiology · 2017
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Qingbo LiCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Illinois 60607, United States. qkli@uic.edu
Christopher R Singh
Shuyi Ma
Nathan D Price
Chinnaswamy Jagannath
The University of Texas Health Science Center at Houston · USUniversity of Illinois Urbana-Champaign · USUniversity of Illinois Chicago · US

Funding

Mechanisms of Mycobacterial Antigen ProcessingR01AI078420 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JAGANNATH, CHINNASWAMY · 2009 to 2013
$2.2M
Identifying network pertubation using secreted protein profiles in glioblastomaR00CA126184 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI PRICE, NATHAN D · 2009 to 2011
$747k
Intracellular mycobacterial proteomeR03AI073469 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LI, QINGBO · 2008 to 2008
$79k
NCI NIH HHS R00 CA126184NIAID NIH HHS AI78420NIAID NIH HHS R01 AI078420NIAID NIH HHS R03 AI073469NIAID NIH HHS R03AI073469-01A1
6 · The paper itself

Abstract

Proteomics has been applied to study intracellular bacteria and phagocytic vacuoles in different host cell lines, especially macrophages (Mφs). For mycobacterial phagosomes, few studies have identified over several hundred proteins for systems assessment of the phagosome maturation and antigen presentation pathways. More importantly, there has been a scarcity in publication on proteomic characterization of mycobacterial phagosomes in dendritic cells (DCs). In this work, we report a global proteomic analysis of Mφ and DC phagosomes infected with a virulent, an attenuated, and a vaccine strain of mycobacteria. We used label-free quantitative proteomics and bioinformatics tools to decipher the regulation of phagosome maturation and antigen presentation pathways in Mφs and DCs. We found that the phagosomal antigen presentation pathways are repressed more in DCs than in Mφs. The results suggest that virulent mycobacteria might co-opt the host immune system to stimulate granuloma formation for persistence while minimizing the antimicrobial immune response to enhance mycobacterial survival. The studies on phagosomal proteomes have also shown promise in discovering new antigen presentation mechanisms that a professional antigen presentation cell might use to overcome the mycobacterial blockade of conventional antigen presentation pathways.

Indexed as

AnimalsCell LineCluster AnalysisComputational BiologyDendritic CellsMacrophagesMiceMice, Inbred C57BLMycobacteriaceaePhagosomesProteomeProteomicsSystems BiologyProteome

Identifiers

PMID21413810
PMCPMC3090528
OpenAlexW2042181838

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.