Evidence map›Paper›PMID 21412926›Full record

ArticleGenes, chromosomes & cancer2011

Congenital anomalies and rhabdoid tumor associated with 22q11 germline deletion and somatic inactivation of the SMARCB1 tumor suppressor.

George Toth, Claudia B Zraly, Tricia L Thomson, Carolyn Jones, Shawn Lapetino, Jonathan Muraskas, Jiwang Zhang, Andrew K Dingwall

Abstract readCase Reports
In one paragraph

Article in Genes, chromosomes & cancer, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

George TothStritch School of Medicine, Loyola University of Chicago, Maywood, IL 60153, USA.
Claudia B Zraly
Tricia L Thomson
Carolyn Jones
Shawn Lapetino
Jonathan Muraskas
Jiwang Zhang
Andrew K Dingwall
Loyola University Chicago · USUniversity of Chicago · US

Funding

The role of PTEN phosphorylation remodeling in hematopoietic stem cell regulationR01HL095896 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI ZHANG, JIWANG · 2010 to 2014
$1.8M
NHLBI NIH HHS 5R01HL95896-2NHLBI NIH HHS R01 HL095896
6 · The paper itself

Abstract

The most common microdeletion in humans involves the 22q11 region. Congenital anomalies associated with 22q11 loss include cardiac and facial defects. Less frequent is the co-presentation of malignant rhabdoid tumors that are highly aggressive childhood malignancies typically found in renal or extra-renal soft tissues and central nervous system. A newborn patient presented with multiple congenital anomalies consistent with 22q11 deletion syndrome including cleft lip and palate, ear tags and ventricular septal defects co-presenting with an axillary rhabdoid tumor. Comparative genomic hybridization revealed a 2.8 Mb germline deletion in the 22q11.2 region containing genes required for normal fetal development and the SMARCB1 tumor suppressor gene. Analysis of tumor DNA revealed a somatic deletion of exon 7 in the second allele of SMARCB1. Expression of SMARCB1 was absent, while tumor markers including MYC, GFAP, and CLAUDIN-6 were upregulated. The presence of tandem oriented BCRL modules located within interspersed low copy repeat elements throughout the 22q11 distal region may predispose this area for microdeletions through nonalleleic homologous recombination.

Indexed as

Abnormalities, MultipleAllelesChromosomal Proteins, Non-HistoneChromosome DeletionChromosomes, Human, Pair 22DiGeorge SyndromeDNA-Binding ProteinsGenes, Tumor SuppressorGerm-Line MutationHumansInfant, NewbornMaleRecombination, GeneticRhabdoid TumorSMARCB1 ProteinTranscription FactorsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsSMARCB1 ProteinSMARCB1 protein, humanTranscription Factors

Identifiers

PMID21412926
PMCPMC3075385
OpenAlexW1973826502

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.