Evidence map›Paper›PMID 21412925›Full record

ArticleProtein science : a publication of the Protein Society2011

Apparent structural differences at the tetramerization region of erythroid and nonerythroid beta spectrin as discriminated by phage displayed scFvs.

Yuanli Song, Chloe Antoniou, Adnan Memic, Brian K Kay, L W-M Fung

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuanli SongDepartment of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, USA.
Chloe Antoniou
Adnan Memic
Brian K Kay
L W-M Fung
University of Illinois Chicago · US

Funding

Development of Nanoscale Neuromodulating PlatformsR01EY016094 · NEI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PEPPERBERG, DAVID R · 2006 to 2010
$6.7M
Assembly of Spectrin IsoformsR01GM068621 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI FUNG, LESLIE W. · 2003 to 2009
$1.5M
NEI NIH HHS GM68621EY016094NIGMS NIH HHS R01 GM068621
6 · The paper itself

Abstract

We have screened a human immunoglobulin single-chain variable fragment (scFv) phage library against the C-terminal tetramerization regions of erythroid and nonerythroid beta spectrin (βI-C1 and βII-C1, respectively) to explore the structural uniqueness of erythroid and nonerythroid β-spectrin isoforms. We have identified interacting scFvs, with clones "G5" and "A2" binding only to βI-C1, and clone "F11" binding only to βII-C1. The K(d) values, estimated by competitive enzyme-linked immunosorbent assay, of these scFvs with their target spectrin proteins were 0.1-0.3 μM. A more quantitative K(d) value from isothermal titration calorimetry experiments with the recombinant G5 and βI-C1 was 0.15 μM. The α-spectrin fragments (model proteins), αI-N1 and αII-N1, competed with the βI-C1, or βII-C1, binding scFvs, with inhibitory concentration (IC(50) ) values of ∼50 μM for αI-N1, and ∼0.5 μM for αII-N1. Our predicted structures of βI-C1 and βII-C1 suggest that the Helix B' of the C-terminal partial domain of βI differs from that of βII. Consequently, an unstructured region downstream of Helix B' in βI may interact specifically with the unstructured, complementarity determining region H1 of G5 or A2 scFv. The corresponding region in βII was helical, and βII did not bind G5 scFv. Our results suggest that it is possible for cellular proteins to differentially associate with the C-termini of different β-spectrin isoforms to regulate α- and β-spectrin association to form functional spectrin tetramers, and may sort β-spectrin isoforms to their specific cellular localizations.

Indexed as

Protein MultimerizationAmino Acid SequenceBinding, CompetitiveBinding SitesBlotting, WesternCalorimetryCircular DichroismEnzyme-Linked Immunosorbent AssayErythroid CellsHumansKineticsModels, MolecularMolecular Sequence DataPeptide LibraryProtein BindingProtein IsoformsPeptide LibraryProtein IsoformsRecombinant ProteinsSingle-Chain AntibodiesSpectrin

Identifiers

PMID21412925
PMCPMC3125871
OpenAlexW2020675396

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.