Evidence map›Paper›PMID 21410778›Full record

ArticleMolecular microbiology2011

Expression of the ompATb operon accelerates ammonia secretion and adaptation of Mycobacterium tuberculosis to acidic environments.

Houhui Song, Jason Huff, Katharine Janik, Kerstin Walter, Christine Keller, Stefan Ehlers, Stefan H Bossmann, Michael Niederweis

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Molecular Identification and Acid Stress Response of anInternational journal of molecular sciences · 2023
    Article
  8. Article
  9. Review
  10. Phenotypic adaptation ofFrontiers in cellular and infection microbiology · 2022
    Review
  11. Production of ammonia makes Venusian clouds habitable and explains observed cloud-level chemical anomalies.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. AC2P20 selectively killsRSC advances · 2021
    Article
  13. Review
  14. Article
  15. Vaccines Against Tuberculosis: Problems and Prospects (Review).Applied biochemistry and microbiology · 2020
    Article
  16. Determinants of Phagosomal pH During Host-Pathogen Interactions.Frontiers in cell and developmental biology · 2020
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Houhui SongDepartment of Microbiology, University of Alabama at Birmingham, 609 Bevill Biomedical Research Building, 845 19th Street South, Birmingham, AL 35294, USA.
Jason Huff
Katharine Janik
Kerstin Walter
Christine Keller
Stefan Ehlers
Stefan H Bossmann
Michael Niederweis
University of Alabama at Birmingham · USKansas State University · US

Funding

Target IdentificationP01AI074805 · NIAID · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2009 to 2013
$8.7M
BASIC MECHANISMS OF LUNG DISEASEST32HL007553 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YOTHER, JANET L · 1985 to 2007
$2.2M
Porins of Mycobacterium tuberculosisR01AI063432 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NIEDERWEIS, MICHAEL · 2005 to 2009
$1.7M
NHLBI NIH HHS T32 HL007553NHLBI NIH HHS T32 HL07553NIAID NIH HHS AI063432NIAID NIH HHS AI074805NIAID NIH HHS N01 AI030036NIAID NIH HHS P01 AI074805NIAID NIH HHS R01 AI063432
6 · The paper itself

Abstract

Homeostasis of intracellular pH is a trait critical for survival of Mycobacterium tuberculosis in macrophages. However, mechanisms by which M. tuberculosis adapts to acidic environments are poorly understood. In this study, we analysed the physiological functions of OmpATb, a surface-accessible protein of M. tuberculosis. OmpATb did not complement the permeability defects of a Mycobacterium smegmatis porin mutant to glucose, serine and glycerol, in contrast to the porin MspA. Uptake rates of these solutes were unchanged in an ompATb operon mutant of M. tuberculosis indicating that OmpATb is not a general porin. Chemical analysis of low-pH culture filtrates showed that the proteins encoded by the ompATb operon are involved in generating a rapid ammonia burst, which neutralized medium pH and preceded exponential growth of M. tuberculosis. Addition of ammonia accelerated growth of the ompATb operon mutant demonstrating that ammonia secretion is indeed a mechanism by which M. tuberculosis neutralizes acidic environments. Infection experiments revealed that the ompATb operon was not required for full virulence in mice suggesting that M. tuberculosis has multiple mechanisms of resisting phagosomal acidification. Taken together, these results show that the ompATb operon is necessary for rapid ammonia secretion and adaptation of M. tuberculosis to acidic environments in vitro but not in mice.

Indexed as

Gene Expression Regulation, BacterialOperonAcidsAdaptation, PhysiologicalAmmoniaAnimalsBacterial ProteinsEnzyme-Linked Immunosorbent AssayHydrogen-Ion ConcentrationMiceMice, Inbred BALB CMycobacterium smegmatisMycobacterium tuberculosisPorinsSequence DeletionTuberculosisAcidsAmmoniaBacterial ProteinsOmpATb protein, Mycobacterium tuberculosisPorins

Identifiers

PMID21410778
PMCPMC3091969
OpenAlexW1831560899

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.