Evidence map›Paper›PMID 21408189›Full record

ArticlePloS one2011

Copy number variation in patients with disorders of sex development due to 46,XY gonadal dysgenesis.

Stefan White, Thomas Ohnesorg, Amanda Notini, Kelly Roeszler, Jacqueline Hewitt, Hinda Daggag, Craig Smith, Erin Turbitt, Sonja Gustin, Jocelyn van den Bergen and 14 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
  2. <italic>WT1</italic> Deletion in 46,XY DSD: The Importance of Copy Number Variant Analysis.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Expanding the phenotype of copy number variations involving NR0B1 (DAX1).European journal of human genetics : EJHG · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Journal of clinical research in pediatric endocrinology · 2022
    Review
  15. Article
  16. Transcriptional control of human gametogenesis.Human reproduction update · 2022
    Article
  17. Article
  18. Review
  19. Review
  20. Duplications in 19p13.3 are associated with male infertility.Journal of assisted reproduction and genetics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 2 countries.

Stefan WhiteMurdoch Childrens Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.
Thomas Ohnesorg
Amanda Notini
Kelly Roeszler
Jacqueline Hewitt
Hinda Daggag
Craig Smith
Erin Turbitt
Sonja Gustin
Jocelyn van den Bergen
Denise Miles
Patrick Western
Valerie Arboleda
Valerie Schumacher
Lavinia Gordon
Katrina Bell
Henrik Bengtsson
Terry Speed
John Hutson
Garry Warne
Vincent Harley
Peter Koopman
Eric Vilain
Andrew Sinclair
Royal Children's Hospital · AUMurdoch Children's Research Institute · AULos Angeles Medical Center · USUniversity of Melbourne · AUWalter and Eliza Hall Institute of Medical Research · AUBoston Children's Hospital · USSt Vincents Institute of Medical Research · AUUniversity of Queensland · AU

Funding

Gene Dosage in Mammalian Sexual DevelopmentR01HD044513 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VILAIN, ERIC J. · 2003 to 2013
$3.4M
6 · The paper itself

Abstract

Disorders of sex development (DSD), ranging in severity from mild genital abnormalities to complete sex reversal, represent a major concern for patients and their families. DSD are often due to disruption of the genetic programs that regulate gonad development. Although some genes have been identified in these developmental pathways, the causative mutations have not been identified in more than 50% 46,XY DSD cases. We used the Affymetrix Genome-Wide Human SNP Array 6.0 to analyse copy number variation in 23 individuals with unexplained 46,XY DSD due to gonadal dysgenesis (GD). Here we describe three discrete changes in copy number that are the likely cause of the GD. Firstly, we identified a large duplication on the X chromosome that included DAX1 (NR0B1). Secondly, we identified a rearrangement that appears to affect a novel gonad-specific regulatory region in a known testis gene, SOX9. Surprisingly this patient lacked any signs of campomelic dysplasia, suggesting that the deletion affected expression of SOX9 only in the gonad. Functional analysis of potential SRY binding sites within this deleted region identified five putative enhancers, suggesting that sequences additional to the known SRY-binding TES enhancer influence human testis-specific SOX9 expression. Thirdly, we identified a small deletion immediately downstream of GATA4, supporting a role for GATA4 in gonad development in humans. These CNV analyses give new insights into the pathways involved in human gonad development and dysfunction, and suggest that rearrangements of non-coding sequences disturbing gene regulation may account for significant proportion of DSD cases.

Indexed as

AlgorithmsAnimalsCalcium-Calmodulin-Dependent Protein Kinase Type 1Chromosome AberrationsChromosome DeletionChromosomes, Human, Pair 17Chromosomes, Human, Pair 8DNA Copy Number VariationsFemaleGATA4 Transcription FactorGene Expression RegulationGene RearrangementGonadal Dysgenesis, 46,XYGonadsHSP40 Heat-Shock ProteinsHumansCalcium-Calmodulin-Dependent Protein Kinase Type 1Camk1d protein, mouseGATA4 protein, humanGATA4 Transcription FactorHSP40 Heat-Shock ProteinsSOX9 protein, humanSOX9 Transcription Factor

Identifiers

PMID21408189
PMCPMC3049794
OpenAlexW2011266555

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.