Evidence map›Paper›PMID 21408158›Full record

ArticlePloS one2011

Nuclear receptor Rev-erb alpha (Nr1d1) functions in concert with Nr2e3 to regulate transcriptional networks in the retina.

Nissa J Mollema, Yang Yuan, Austin S Jelcick, Andrew J Sachs, Désirée von Alpen, Daniel Schorderet, Pascal Escher, Neena B Haider

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 74 citations in OpenAlex.

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  20. The circadian clock geneFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nissa J MollemaDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.
Yang Yuan
Austin S Jelcick
Andrew J Sachs
Désirée von Alpen
Daniel Schorderet
Pascal Escher
Neena B Haider
University of Nebraska Medical Center · USUniversity of Lausanne · CHInstitut de Recherche en Opthalmologie · CH

Funding

TRANSGENIC EXPRESSION ANALYSIS OF MIRNA-144P20RR018788 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI NYSTUEN, ARNE M · 2003 to 2011
$16.5M
Genetic Modifiers of Photoreceptor Development and MaintenanceR01EY017653 · NEI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI HAIDER, NEENA B · 2009 to 2016
$3.7M
NCRR NIH HHS 5P20 RR018788-02NCRR NIH HHS P20 RR018788NEI NIH HHS EY017653NEI NIH HHS R01 EY017653
6 · The paper itself

Abstract

The majority of diseases in the retina are caused by genetic mutations affecting the development and function of photoreceptor cells. The transcriptional networks directing these processes are regulated by genes such as nuclear hormone receptors. The nuclear hormone receptor gene Rev-erb alpha/Nr1d1 has been widely studied for its role in the circadian cycle and cell metabolism, however its role in the retina is unknown. In order to understand the role of Rev-erb alpha/Nr1d1 in the retina, we evaluated the effects of loss of Nr1d1 to the developing retina and its co-regulation with the photoreceptor-specific nuclear receptor gene Nr2e3 in the developing and mature retina. Knock-down of Nr1d1 expression in the developing retina results in pan-retinal spotting and reduced retinal function by electroretinogram. Our studies show that NR1D1 protein is co-expressed with NR2E3 in the outer neuroblastic layer of the developing mouse retina. In the adult retina, NR1D1 is expressed in the ganglion cell layer and is co-expressed with NR2E3 in the outer nuclear layer, within rods and cones. Several genes co-targeted by NR2E3 and NR1D1 were identified that include: Nr2c1, Recoverin, Rgr, Rarres2, Pde8a, and Nupr1. We examined the cyclic expression of Nr1d1 and Nr2e3 over a twenty-four hour period and observed that both nuclear receptors cycle in a similar manner. Taken together, these studies reveal a novel role for Nr1d1, in conjunction with its cofactor Nr2e3, in regulating transcriptional networks critical for photoreceptor development and function.

Indexed as

AgingAnimalsCell CountEnhancer Elements, GeneticGene Regulatory NetworksInjectionsLightLight Signal TransductionMiceNuclear Receptor Subfamily 1, Group D, Member 1Organ SpecificityOrphan Nuclear ReceptorsProtein TransportRetinaRNA, Small InterferingStaining and LabelingNr1d1 protein, mouseNr2e3 protein, mouseNuclear Receptor Subfamily 1, Group D, Member 1Orphan Nuclear ReceptorsRNA, Small Interfering

Identifiers

PMID21408158
PMCPMC3050883
OpenAlexW2050672796

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.