Evidence map›Paper›PMID 21405873›Full record

ArticlePhysical review. E, Statistical, nonlinear, and soft matter physics2011

How geometry and internal bias affect the accuracy of eukaryotic gradient sensing.

Bo Hu, Wen Chen, Wouter-Jan Rappel, Herbert Levine

Open access · greenAbstract read
In one paragraph

Article in Physical review. E, Statistical, nonlinear, and soft matter physics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Collective gradient sensing and chemotaxis: modeling and recent developments.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Review
  7. Cell-to-cell variation sets a tissue-rheology-dependent bound on collective gradient sensing.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. How input noise limits biochemical sensing in ultrasensitive systems.Physical review. E, Statistical, nonlinear, and soft matter physics · 2014
    Article
  9. Article
  10. Article
  11. Article
  12. How input fluctuations reshape the dynamics of a biological switching system.Physical review. E, Statistical, nonlinear, and soft matter physics · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bo HuDepartment of Physics and Center for Theoretical Biological Physics, University of California, San Diego, La Jolla, California 92093-0374, USA.
Wen Chen
Wouter-Jan Rappel
Herbert Levine
University of California, San Diego · US

Funding

Project 5P01GM078586 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAPPEL, WOUTER-JAN · 2007 to 2016
$11.2M
NIGMS NIH HHS P01 GM078586
6 · The paper itself

Abstract

Many motile eukaryotic cells determine their direction by measuring external chemical gradients through the binding of ligands to membrane bound receptors. This process is limited by fluctuations arising from the binding process and from the diffusion of the ligand molecules. Here, we apply estimation-theoretic methods to determine the physical limits of gradient sensing for cells that are noncircular and for cells that have an internal bias. Specifically, we derive theoretical expressions for the accuracy of gradient sensing in elliptical cells. This accuracy for highly elliptical cells can significantly deviate from the gradient sensing limits derived for circular cells. Furthermore, we find that a cell cannot improve its sensing of the gradient steepness and direction simultaneously by elongating its cell body. Finally, we derive a lower bound on the accuracy of gradient sensing for cells that possess an internal bias and compare our analytical results with recent experimental findings.

Indexed as

Cell SizeModels, BiologicalChemotaxisComputer SimulationEukaryotic Cells

Identifiers

PMID21405873
PMCPMC3120218
OpenAlexW2034455358

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.