Evidence map›Paper›PMID 21402890›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

Targeting TLR4 signaling by TLR4 Toll/IL-1 receptor domain-derived decoy peptides: identification of the TLR4 Toll/IL-1 receptor domain dimerization interface.

Vladimir Y Toshchakov, Henryk Szmacinski, Leah A Couture, Joseph R Lakowicz, Stefanie N Vogel

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Pooled it
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  5. TLR5-Derived, TIR-Interacting Decoy Peptides to Inhibit TLR Signaling.Journal of immunology (Baltimore, Md. : 1950) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Vladimir Y ToshchakovDepartment of Microbiology and Immunology, University of Maryland, Baltimore, MD 21201, USA. vtoshchakov@som.umaryland.edu
Henryk Szmacinski
Leah A Couture
Joseph R Lakowicz
Stefanie N Vogel
University of Maryland, Baltimore · US

Funding

DIFFERENTIATIVE SIGNALS FOR MACROPHAGE ACTIVATIONR37AI018797 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI VOGEL, STEFANIE N. · 2000 to 2009
$5.3M
Deciphering the architecture of TLR signaling complexesR01AI082299 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI TOSHCHAKOV, VLADIMIR Y. · 2010 to 2020
$3.8M
DIFFERENTIATIVE SIGNALS FOR MACROPHANGE ACTIVATIONR01AI018797 · NIAID · U.S. UNIFORMED SERVICES UNIV OF HLTH SCI · PI VOGEL, STEFANIE N. · 1985 to 2014
$3.8M
Method for Detection of Secreted Proteins in Single Cell AssaysR21CA147975 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI SZMACINSKI, HENRYK · 2010 to 2012
$617k
Differentiative Signals for Macrophage ActivationR56AI018797 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI VOGEL, STEFANIE N. · 2015 to 2015
$506k
Howard Hughes Medical InstituteNCI NIH HHS CA147975NCI NIH HHS R21 CA147975NIAID NIH HHS AI082299NIAID NIH HHS AI18797NIAID NIH HHS R01 AI018797NIAID NIH HHS R01 AI082299NIAID NIH HHS R37 AI018797NIAID NIH HHS R56 AI018797
6 · The paper itself

Abstract

Agonist-induced dimerization of TLR4 Toll/IL-1R (TIR) domains initiates intracellular signaling. Therefore, identification of the TLR4-TIR dimerization interface is one key to the rational design of therapeutics that block TLR4 signaling. A library of cell-permeating decoy peptides, each of which represents a nonfragmented patch of the TLR4 TIR surface, was designed such that the peptides entirely encompass the TLR4 TIR surface. Each peptide was synthesized in tandem with a cell-permeating Antennapedia homeodomain sequence and tested for the ability to inhibit early cytokine mRNA expression and MAPK activation in LPS-stimulated primary murine macrophages. Five peptides--4R1, 4R3, 4BB, 4R9, and 4αE--potently inhibited all manifestations of TLR4, but not TLR2 signaling. When tested for their ability to bind directly to TLR4 TIR by Förster resonance energy transfer using time-resolved fluorescence spectroscopy, Bodipy-TMR-X-labeled 4R1, 4BB, and 4αE quenched fluorescence of TLR4-Cerulean expressed in HeLa or HEK293T cells, whereas 4R3 was partially active, and 4R9 was least active. These findings suggest that the area between the BB loop of TLR4 and its fifth helical region mediates TLR4 TIR dimerization. Moreover, our data provide direct evidence for the utility of the decoy peptide approach, in which peptides representing various surface-exposed segments of a protein are initially probed for the ability to inhibit protein function, and then their specific targets are identified by Förster resonance energy transfer to define recognition sites in signaling proteins that may be targeted therapeutically to disrupt functional transient protein interactions.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceAnimalsBinding SitesCells, CulturedCytokinesFluorescence Resonance Energy TransferHEK293 CellsHeLa CellsHumansMacrophagesMiceMice, Inbred C57BLMicroscopy, FluorescenceModels, MolecularPeptide LibraryCytokinesPeptide LibraryPeptidesReceptors, Interleukin-1Toll-Like Receptor 4Toll-Like Receptors

Identifiers

PMID21402890
PMCPMC3071460
OpenAlexW1920324450

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.