Evidence map›Paper›PMID 21402026›Full record

ArticleBiophysical journal2011

3₁₀-helix conformation facilitates the transition of a voltage sensor S4 segment toward the down state.

Christine S Schwaiger, Pär Bjelkmar, Berk Hess, Erik Lindahl

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
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  16. Article
  17. Does Proton Conduction in the Voltage-Gated HThe journal of physical chemistry. B · 2017
    Article
  18. Article
  19. Cardiac Na Channels: Structure to Function.Current topics in membranes · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christine S SchwaigerTheoretical and Computational Biophysics, Department of Theoretical Physics and Swedish e-Science Research Center, Royal Institute of Technology, Stockholm, Sweden.
Pär Bjelkmar
Berk Hess
Erik Lindahl

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The activation of voltage-gated ion channels is controlled by the S4 helix, with arginines every third residue. The x-ray structures are believed to reflect an open-inactivated state, and models propose combinations of translation, rotation, and tilt to reach the resting state. Recently, experiments and simulations have independently observed occurrence of 3(10)-helix in S4. This suggests S4 might make a transition from α- to 3(10)-helix in the gating process. Here, we show 3(10)-helix structure between Q1 and R3 in the S4 segment of a voltage sensor appears to facilitate the early stage of the motion toward a down state. We use multiple microsecond-steered molecular simulations to calculate the work required for translating S4 both as α-helix and transformed to 3(10)-helix. The barrier appears to be caused by salt-bridge reformation simultaneous to R4 passing the F233 hydrophobic lock, and it is almost a factor-two lower with 3(10)-helix. The latter facilitates translation because R2/R3 line up to face E183/E226, which reduces the requirement to rotate S4. This is also reflected in a lower root mean-square deviation distortion of the rest of the voltage sensor. This supports the 3(10) hypothesis, and could explain some of the differences between the open-inactivated- versus activated-states.

Indexed as

Molecular Dynamics SimulationArginineElectricityGlutamic AcidHydrogen BondingHydrophobic and Hydrophilic InteractionsIon ChannelsMovementProtein Structure, SecondaryProtein Structure, TertiaryRotationArginineGlutamic AcidIon Channels

Identifiers

PMID21402026
PMCPMC3059565

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.