Evidence map›Paper›PMID 21401735›Full record

ArticleMolecular microbiology2011

aprABC: a Mycobacterium tuberculosis complex-specific locus that modulates pH-driven adaptation to the macrophage phagosome.

Robert B Abramovitch, Kyle H Rohde, Fong-Fu Hsu, David G Russell

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 1 synthesis or guideline pooled it, 223 citations in OpenAlex.

  1. Pooled it
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  18. Cell envelope maintenance by PhoP is essential forProceedings of the National Academy of Sciences of the United States of America · 2025
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76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Robert B AbramovitchDepartment of Microbiology and Immunology, Cornell University, Ithaca, NY 14583, USA.
Kyle H Rohde
Fong-Fu Hsu
David G Russell
Washington University in St. Louis · US

Funding

Washington University Nutrition Obesity Research CenterP30DK056341 · NIDDK · WASHINGTON UNIVERSITY · PI Jonathan R Brestoff · 1999 to 2026
$30.2M
TRANSGENICS COREP60DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI SCHAFFER, JEAN E. · 1986 to 2012
$25.2M
YOGA LIFESTYLE INTERVENTION REDUCES BLOOD PRESSURE IN HIV-INFECTED ADULTSP41RR000954 · NCRR · WASHINGTON UNIVERSITY · PI LIN, XI · 1985 to 2011
$16.0M
Environmental Cues and Responses in TuberculosisR01AI067027 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2006 to 2015
$4.0M
Cell Biology of Mycobacterium Tuberculosis InfectionR01AI057086 · NIAID · CORNELL UNIVERSITY ITHACA · PI RUSSELL, DAVID G · 2003 to 2010
$2.9M
Genetics of Mycobacterium tuberculosis adaptation to the macrophage phagosomeF32AI081482 · NIAID · CORNELL UNIVERSITY · PI ABRAMOVITCH, ROBERT B · 2009 to 2011
$130k
NCRR NIH HHS P41-RR00954NIAID NIH HHS AI067027NIAID NIH HHS AI081482NIAID NIH HHS F32 AI081482NIAID NIH HHS R01 AI057086NIAID NIH HHS R01 AI067027NIDDK NIH HHS P30-DK56341NIDDK NIH HHS P60-DK20579
6 · The paper itself

Abstract

Following phagocytosis by macrophages, Mycobacterium tuberculosis (Mtb) senses the intracellular environment and remodels its gene expression for growth in the phagosome. We have identified an acid and phagosome regulated (aprABC) locus that is unique to the Mtb complex and whose gene expression is induced during growth in acidic environments in vitro and in macrophages. Using the aprA promoter, we generated a strain that exhibits high levels of inducible fluorescence in response to growth in acidic medium in vitro and in macrophages. aprABC expression is dependent on the two-component regulator phoPR, linking phoPR signalling to pH sensing. Deletion of the aprABC locus causes defects in gene expression that impact aggregation, intracellular growth, and the relative levels of storage and cell wall lipids. We propose a model where phoPR senses the acidic pH of the phagosome and induces aprABC expression to fine-tune processes unique for intracellular adaptation of Mtb complex bacteria.

Indexed as

Stress, PhysiologicalArtificial Gene FusionBacterial ProteinsFluorescenceGene DeletionGene Expression Regulation, BacterialGenes, ReporterHydrogen-Ion ConcentrationMacrophagesMycobacterium tuberculosisPhagosomesSignal TransductionBacterial ProteinsPhoP protein, BacteriaPhoR protein, Bacteria

Identifiers

PMID21401735
PMCPMC3138066
OpenAlexW2120387439

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.