ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- African Cultivated, Wild and Weedy Rice (Biology · 2024Review
- A super pan-genomic landscape of rice.Cell research · 2022Article
- GreeNC 2.0: a comprehensive database of plant long non-coding RNAs.Nucleic acids research · 2022Article
- Development and validation of diagnostic SNP markers for quality control genotyping in a collection of four rice (Oryza) species.Scientific reports · 2021Article
- Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.Nucleic acids research · 2021Article
- Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication.Rice (New York, N.Y.) · 2021Review
- Novel cis-acting regulatory elements in wild Oryza species impart improved rice bran quality by lowering the expression of phospholipase D alpha1 enzyme (OsPLDα1).Molecular biology reports · 2020Article
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
- Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- The complex geography of domestication of the African rice Oryza glaberrima.PLoS genetics · 2019Article
- Article
- The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.Plant biotechnology journal · 2018Article
- Genetic variation in blast resistance in rice germplasm from West Africa.Breeding science · 2017Article
- Article
- Article
- Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species.PloS one · 2017Article
- Genetic Variation and Population Structure ofFrontiers in plant science · 2017Article
- miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.Rice (New York, N.Y.) · 2016Article
- Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species.Scientific reports · 2016Article
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3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Nucleotide variation in 14 unlinked nuclear genes was investigated in species-wide samples of African rice (Oryza glaberrima) and its wild progenitor (O. barthii). Average estimates of nucleotide diversity were extremely low in both species (θ (sil) = 0.0007 for O. glaberrima; θ (sil) = 0.0024 for O. barthii). About 70% less diversity was found in O. glaberrima than in its progenitor O. barthii. Coalescent simulation indicated that such dramatic reduction of nucleotide diversity in African rice could be explained mainly by a severe bottleneck during its domestication. The progenitor of African rice maintained also low genetic diversity, which may be attributed to small effective population size in O. barthii. Self-pollinating would be another factor leading to the unusually low diversity in both species. Genealogical analyses showed that all O. glaberrima accessions formed a strongly supported cluster with seven O. barthii individuals that were sampled exclusively from the proposed domestication centers of African rice. Population structure and principal component analyses found that the O. glaberrima group was homogeneous with no obvious genetic subdivision, in contrast to the heterogeneous O. barthii cluster. These findings support a single domestication origin of African rice in areas of the Upper Niger and Sahelian Rivers.
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