Evidence map›Paper›PMID 21398570›Full record

ArticleThe Plant cell2011

Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.

Rumyana Karlova, Faye M Rosin, Jacqueline Busscher-Lange, Violeta Parapunova, Phuc T Do, Alisdair R Fernie, Paul D Fraser, Charles Baxter, Gerco C Angenent, Ruud A de Maagd

Abstract read
In one paragraph

Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Overexpression ofPlants (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. SlPLT6 controls ripening initiation and quality traits through modulation of histone acetylation and methylation in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Two transcription factors play critical roles in mediating epigenetic regulation of fruit ripening in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Molecular breeding of tomato: Advances and challenges.Journal of integrative plant biology · 2025
    Review
  12. Article
  13. Article
  14. Forestry research · 2025
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rumyana KarlovaLaboratory of Molecular Biology, Wageningen University, 6700 AP Wageningen, The Netherlands.
Faye M Rosin
Jacqueline Busscher-Lange
Violeta Parapunova
Phuc T Do
Alisdair R Fernie
Paul D Fraser
Charles Baxter
Gerco C Angenent
Ruud A de Maagd

Funding

Biotechnology and Biological Sciences Research Council BB/G024901/1
6 · The paper itself

Abstract

Fruit ripening in tomato (Solanum lycopersicum) requires the coordination of both developmental cues as well as the plant hormone ethylene. Although the role of ethylene in mediating climacteric ripening has been established, knowledge regarding the developmental regulators that modulate the involvement of ethylene in tomato fruit ripening is still lacking. Here, we show that the tomato APETALA2a (AP2a) transcription factor regulates fruit ripening via regulation of ethylene biosynthesis and signaling. RNA interference (RNAi)-mediated repression of AP2a resulted in alterations in fruit shape, orange ripe fruits, and altered carotenoid accumulation. Microarray expression analyses of the ripe AP2 RNAi fruits showed altered expression of genes involved in various metabolic pathways, such as the phenylpropanoid and carotenoid pathways, as well as in hormone synthesis and perception. Genes involved in chromoplast differentiation and other ripening-associated processes were also differentially expressed, but softening and ethylene biosynthesis occurred in the transgenic plants. Ripening regulators RIPENING-INHIBITOR, NON-RIPENING, and COLORLESS NON-RIPENING (CNR) function upstream of AP2a and positively regulate its expression. In the pericarp of AP2 RNAi fruits, mRNA levels of CNR were elevated, indicating that AP2a and CNR are part of a negative feedback loop in the regulation of ripening. Moreover, we demonstrated that CNR binds to the promoter of AP2a in vitro.

Indexed as

Gene Expression ProfilingCarotenoidsEthylenesFruitGene Expression Regulation, PlantGenes, PlantPhylogenyPlant Growth RegulatorsPlant ProteinsPlants, Genetically ModifiedPlastidsPromoter Regions, GeneticRegulatory Elements, TranscriptionalRNA InterferenceSolanum lycopersicumTranscription FactorsCarotenoidsethyleneEthylenesPlant Growth RegulatorsPlant ProteinsTranscription Factors

Identifiers

PMID21398570
PMCPMC3082273

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.