Evidence map›Paper›PMID 21396134›Full record

ArticleVirology journal2011

Entire genome sequence analysis of genotype IX Newcastle disease viruses reveals their early-genotype phylogenetic position and recent-genotype genome size.

Xusheng Qiu, Qing Sun, Shuang Wu, Li Dong, Shunling Hu, Chunchun Meng, Yantao Wu, Xiufan Liu

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xusheng QiuKey Laboratory of Animal Infectious Diseases, Yangzhou University, Yangzhou 225009, PR China.
Qing Sun
Shuang Wu
Li Dong
Shunling Hu
Chunchun Meng
Yantao Wu
Xiufan Liu
Yangzhou University · CNShanghai Veterinary Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSix nucleotide (nt) insertion in the 5'-noncoding region (NCR) of the nucleoprotein (NP) gene of Newcaslte disease virus (NDV) is considered to be a genetic marker for recent genotypes of NDV, which emerged after 1960. However, F48-like NDVs from China, identified a 6-nt insert in the NP gene, have been previously classified into genotype III or genotype IX.

resultsIn order to clarify their phylogenetic position and explore the origin of NDVs with the 6-nt insert and its significance in NDV evolution, we determined the entire genome sequences of five F48-like viruses isolated in China between 1946 and 2002 by RT-PCR amplification of overlapping fragments of full-length genome and rapid amplification of cDNA ends. All the five NDV isolates shared the same genome size of 15,192-nt with the recent genotype V-VIII viruses whereas they had the highest homology with early genotype III and IV isolates.

conclusionsThe unique characteristic of the genome size and phylogenetic position of F48-like viruses warrants placing them in a separate geno-group, genotype IX. Results in this study also suggest that genotype IX viruses most likely originate from a genotype III virus by insertion of a 6-nt motif in the 5'-NCR of the NP gene which had occurred as early as in 1940 s, and might be the common origin of genotype V-VIII viruses.

Indexed as

PhylogenyAnimalsBase SequenceChickensChinaGenome, ViralGenotypeMolecular Sequence DataNewcastle DiseaseNewcastle disease virusNucleocapsid ProteinsNucleoproteinsPoultry DiseasesSequence Analysis, DNAViral Fusion ProteinsViral ProteinsNucleocapsid Proteinsnucleoprotein, Newcastle disease virusNucleoproteinsViral Fusion ProteinsViral Proteins

Identifiers

PMID21396134
PMCPMC3063233
OpenAlexW2121373359

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.