Evidence map›Paper›PMID 21390531›Full record

ArticleMicrobial ecology2011

Viral distribution and life strategies in the Bach Dang Estuary, Vietnam.

Yvan Bettarel, Thierry Bouvier, Martin Agis, Corinne Bouvier, Thuoc Van Chu, Marine Combe, Xavier Mari, Minh Ngoc Nghiem, Thuy Thanh Nguyen, Thu The Pham and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

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  10. Virus ecology of fluvial systems: a blank spot on the map?Biological reviews of the Cambridge Philosophical Society · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Yvan BettarelUMR 5119, ECOSYM, Montpellier 2 University, CNRS, IRD, IFREMER, Montpellier, France. yvan.bettarel@ird.fr
Thierry Bouvier
Martin Agis
Corinne Bouvier
Thuoc Van Chu
Marine Combe
Xavier Mari
Minh Ngoc Nghiem
Thuy Thanh Nguyen
Thu The Pham
Olivier Pringault
Emma Rochelle-Newall
Jean-Pascal Torréton
Huy Quang Tran
Ifremer · FRInstitut de Recherche pour le Développement · FRCentre National de la Recherche Scientifique · FRInstitute of Marine Geology and Geophysics · VNNational Institute Of Hygiene And Epidemiology · VNUniversité de Montpellier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the structure and dynamics of planktonic viruses in freshwater and seawater environments are relatively well documented, little is known about the occurrence and activity of these viruses in estuaries, especially in the tropics. Viral abundance, life strategies, and morphotype distribution were examined in the Bach Dang Estuary (Vietnam) during the dry season in 2009. The abundance of both viruses and their prokaryotic hosts decreased significantly from upstream to downstream, probably as the result of nutrient dilution and osmotic stress faced by the freshwater communities. The antibiotic mitomycin-C revealed that the fraction of lysogenic cells was substantially higher in the lower seawater part of the estuary (max 27.1%) than in the upper freshwater area where no inducible lysogens were observed. The question of whether there is a massive, continuous induction of marine lysogens caused by the mixing with freshwater is considered. Conversely, the production of lytic viruses declined as salinity increased, indicating a spatial succession of viral life strategies in this tropical estuary. Icosahedral tailless viruses with capsids smaller than 60 nm dominated the viral assemblage throughout the estuary (63.0% to 72.1% of the total viral counts), and their distribution was positively correlated with that of viral lytic production. Interestingly, the gamma-proteobacteria explained a significant portion of the variance in the <60 nm and 60 to 90 nm tailless viruses (92% and 80%, respectively), and in the Myoviridae (73%). Also, 60% of the variance of the tailless larger viruses (>90 nm) was explained by the beta-proteobacteria. Overall, these results support the view that the environment, through selection mechanisms, probably shapes the structure of the prokaryotic community. This might be in turn a source of selection for the virioplankton community via specific affiliation favoring particular morphotypes and life strategies.

Indexed as

Virus Physiological PhenomenaFresh WaterMolecular Sequence DataPhylogenySeawaterSodium ChlorideVietnamVirusesVirus LatencySodium Chloride

Identifiers

PMID21390531
OpenAlexW1977434055

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.