Evidence map›Paper›PMID 21390322›Full record

ArticlePloS one2011

The minimal proteome in the reduced mitochondrion of the parasitic protist Giardia intestinalis.

Petr L Jedelský, Pavel Doležal, Petr Rada, Jan Pyrih, Ondřej Smíd, Ivan Hrdý, Miroslava Sedinová, Michaela Marcinčiková, Lubomír Voleman, Andrew J Perry and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 188 citations in OpenAlex.

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  11. Ultrastructural Alterations of the Human PathogenPathogens (Basel, Switzerland) · 2023
    Review
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Petr L JedelskýDepartment of Parasitology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.
Pavel Doležal
Petr Rada
Jan Pyrih
Ondřej Smíd
Ivan Hrdý
Miroslava Sedinová
Michaela Marcinčiková
Lubomír Voleman
Andrew J Perry
Neritza Campo Beltrán
Trevor Lithgow
Jan Tachezy
Charles University · CZMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitosomes of Giardia intestinalis are thought to be mitochondria highly-reduced in response to the oxygen-poor niche. We performed a quantitative proteomic assessment of Giardia mitosomes to increase understanding of the function and evolutionary origin of these enigmatic organelles. Mitosome-enriched fractions were obtained from cell homogenate using Optiprep gradient centrifugation. To distinguish mitosomal proteins from contamination, we used a quantitative shot-gun strategy based on isobaric tagging of peptides with iTRAQ and tandem mass spectrometry. Altogether, 638 proteins were identified in mitosome-enriched fractions. Of these, 139 proteins had iTRAQ ratio similar to that of the six known mitosomal markers. Proteins were selected for expression in Giardia to verify their cellular localizations and the mitosomal localization of 20 proteins was confirmed. These proteins include nine components of the FeS cluster assembly machinery, a novel diflavo-protein with NADPH reductase activity, a novel VAMP-associated protein, and a key component of the outer membrane protein translocase. None of the novel mitosomal proteins was predicted by previous genome analyses. The small proteome of the Giardia mitosome reflects the reduction in mitochondrial metabolism, which is limited to the FeS cluster assembly pathway, and a simplicity in the protein import pathway required for organelle biogenesis.

Indexed as

Amino Acid SequenceAnimalsCluster AnalysisEvolution, MolecularGiardia lambliaMitochondriaMitochondrial ProteinsMitochondrial SizeMolecular Sequence DataParasitesProtein FoldingProtein MultimerizationProteomeTandem Mass SpectrometryMitochondrial ProteinsProteome

Identifiers

PMID21390322
PMCPMC3044749
OpenAlexW1973414324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.