Evidence map›Paper›PMID 21386990›Full record

ArticlePloS one2011

Quantitative proteomics identifies the Myb-binding protein p160 as a novel target of the von Hippel-Lindau tumor suppressor.

Yanlai Lai, Mei Qiao, Meihua Song, Susan T Weintraub, Yuzuru Shiio

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

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  13. Genetic modification of hypoxia signaling in animal models and its effect on cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yanlai LaiGreehey Children's Cancer Research Institute, San Antonio, Texas, United States of America.
Mei Qiao
Meihua Song
Susan T Weintraub
Yuzuru Shiio
Cancer Research Institute of the Slovak Academy of Sciences · SKChildren's Cancer Center · USThe University of Texas Health Science Center · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Analysis of the VHL-HIF hydroxylase pathwayR01CA125020 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SHIIO, YUZURU · 2007 to 2011
$1.1M
NHLBI PROTEOMICS INITIATIVE-268028179N01HV028179 · HV · INSTITUTE FOR SYSTEMS BIOLOGY · 2002 to 2002
–
NCI NIH HHS P30 CA054174NCI NIH HHS P30CA54174NCI NIH HHS R01 CA125020NCI NIH HHS R01CA125020NHLBI NIH HHS N01 HV028179NHLBI NIH HHS N01-HV-28179
6 · The paper itself

Abstract

backgroundThe von Hippel-Lindau (VHL) tumor suppressor gene encodes a component of a ubiquitin ligase complex, which is best understood as a negative regulator of hypoxia inducible factor (HIF). VHL ubiquitinates and degrades the α subunits of HIF, and this is proposed to suppress tumorigenesis and tumor angiogenesis. However, several lines of evidence suggest that there are unidentified substrates or targets for VHL that play important roles in tumor suppression. METHODOLOGY/PRINCIPAL

findingsEmploying quantitative proteomics, we developed an approach to systematically identify the substrates of ubiquitin ligases and using this method, we identified the Myb-binding protein p160 as a novel substrate of VHL. CONCLUSIONS/SIGNIFICANCE: A major barrier to understanding the functions of ubiquitin ligases has been the difficulty in pinpointing their ubiquitination substrates. The quantitative proteomics approach we devised for the identification of VHL substrates will be widely applicable to other ubiquitin ligases.

Indexed as

ProteomicsAnimalsBALB 3T3 CellsCarrier ProteinsCells, CulturedDeferoxamineDNA-Binding ProteinsEnzyme InhibitorsHumansIsotope LabelingLeupeptinsMiceModels, BiologicalNuclear ProteinsProteasome Endopeptidase ComplexProtein Processing, Post-Translationalbenzyloxycarbonylleucyl-leucyl-leucine aldehydeCarrier ProteinsDeferoxamineDNA-Binding ProteinsEnzyme InhibitorsLeupeptinsMybbp1a protein, mouseNuclear ProteinsProteasome Endopeptidase ComplexRNA-Binding ProteinsSiderophoresTranscription FactorsUbiquitin-Protein LigasesVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID21386990
PMCPMC3046137
OpenAlexW1963680260

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.