Evidence map›Paper›PMID 21385947›Full record

ArticlePhysiological genomics2011

The common African American polymorphism SCN5A-S1103Y interacts with mutation SCN5A-R680H to increase late Na current.

Jianding Cheng, David J Tester, Bi-Hua Tan, Carmen R Valdivia, Stacie Kroboth, Bin Ye, Craig T January, Michael J Ackerman, Jonathan C Makielski

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jianding ChengDivision of Cardiovascular Medicine, Department of Medicine, University of Wisconsin, Madison, Wisconsin 53792, USA.
David J Tester
Bi-Hua Tan
Carmen R Valdivia
Stacie Kroboth
Bin Ye
Craig T January
Michael J Ackerman
Jonathan C Makielski
University of Wisconsin–Madison · USMayo Clinic · US

Funding

Cellular &Clinical Phenotypes of Novel SCN5a MutationsR01HL071092 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI MAKIELSKI, JONATHAN C · 2003 to 2011
$3.1M
DETERMINANTS OF CARDIAC REPOLARIZATIONR01HL060723 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI JANUARY, CRAIG T · 2000 to 2009
$2.8M
NHLBI NIH HHS HL-42569NHLBI NIH HHS HL-60723NHLBI NIH HHS HL-71092NHLBI NIH HHS R01 HL071092
6 · The paper itself

Abstract

The common polymorphism SCN5A-S1103Y (∼13% allelic frequency in African Americans) is a risk factor for arrhythmia, sudden unexplained death (SUD), and sudden infant death syndrome. Prompted by a case of autopsy-negative SUD in a 23-year-old African American man who collapsed while playing football, we hypothesized that S1103Y interacted with other SCN5A variants to pathologically modify sodium current (I(Na)). Mutational analysis of arrhythmia-associated genes in the victim revealed the variants SCN5A-R680H and SCN5A-S1103Y. These variants were made both separately and in the same cDNA construct of the alternative splice variant backgrounds (SCN5A-Q1077del and Q1077) and expressed in HEK293 cells. In the most abundant SCN5A-Q1077del, late I(Na) for S1103Y alone was not significantly different from wild type (WT). However, late I(Na) for R680H, R680H+S1103Y (coexpressed), and R680H/S1103Y (on the same cDNA) was increased 2.1-, 3.4-, and 3.6-fold, respectively, compared with WT. Intracellular acidosis (pH 6.7) increased late I(Na) for S1103Y, R680H, R680H+S1103Y, and R680H/S1103Y by 2.2-, 2.4-, 5.0-, and 5.5-fold, respectively, compared with WT at pH 6.7. Expression in the less abundant SCN5A-Q1077 showed no increased late I(Na). This is the initial report of a functional interaction for the common polymorphism S1103Y with another mutation in the major transcript Q1077del of SCN5A. The "double hit" and environmental factor of acidosis may have converged to cause arrhythmic sudden death in this case.

Indexed as

MutationPolymorphism, GeneticArrhythmias, CardiacBase SequenceBlack or African AmericanDeath, SuddenDNA Mutational AnalysisGene FrequencyHEK293 CellsHumansMaleMolecular Sequence DataNAV1.5 Voltage-Gated Sodium ChannelSodiumSodium ChannelsNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanSodiumSodium Channels

Identifiers

PMID21385947
PMCPMC3110896
OpenAlexW2037737884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.