Evidence map›Paper›PMID 21383689›Full record

ArticleOncogene2011

Methylation of an intronic region regulates miR-199a in testicular tumor malignancy.

H-H Cheung, A J Davis, T-L Lee, A L Pang, S Nagrani, O M Rennert, W-Y Chan

Abstract read
In one paragraph

Article in Oncogene, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Methylation alteration ofOncotarget · 2019
    Article
  12. Testicular germ cell tumor: a comprehensive review.Cellular and molecular life sciences : CMLS · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Clinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  17. Article
  18. Epigenetics and MicroRNAs in Cancer.International journal of molecular sciences · 2018
    Review
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

H-H CheungSection on Clinical and Developmental Genomics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.
A J Davis
T-L Lee
A L Pang
S Nagrani
O M Rennert
W-Y Chan
National Institutes of Health · USEunice Kennedy Shriver National Institute of Child Health and Human Development · US

Funding

Transcription regulation and functional studies of germ cell specific genesZIAHD008817 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI RENNERT, OWEN · 2009 to 2013
$2.4M
Genetic and epigenomic studies of testicular tumorZIAHD008820 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI RENNERT, OWEN · 2009 to 2012
$660k
Intramural NIH HHS Z99 HD999999
6 · The paper itself

Abstract

In the testicular cancer cell line, NT2, we previously demonstrated that differentially methylated regions were located in introns or intergenic regions, and postulated these might regulate non-coding RNAs. Three microRNAs and three small nucleolar RNAs were differentially methylated; one, miR-199a, was associated with the progression and prognosis of gastric and ovarian cancers. In this report we document, by epigenomic profiling of testicular tissue, that miR-199a is transcribed as antisense of dynamin 3 (chromosome 1q24.3), and hypermethylation of this region is correlated with miR-199a-5p/3p repression and tumor malignancy. Re-expression of miR-199a in testicular cancer cells led to suppression of cell growth, cancer migration, invasion and metastasis. The miR-199a-5p, one of two mature miRNA species derived from miR-199a, is associated with tumor malignancy. We further identified the embryonal carcinoma antigen podocalyxin-like protein 1 (PODXL), an anti-adhesive protein expressed in aggressive tumors, as a target of miR-199a-5p. We demonstrated PODXL is overexpressed in malignant testicular tumor, and cellular depletion of PODXL resulted in suppression of cancer invasion. The inverse relationship between PODXL and miR-199a-5p expression suggests PODXL is a downstream effector mediating the action of miR199a-5p. This report identifies DNA methylation, miR-199a dysregulation and PODXL as critical factors in tumor malignancy.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticIntronsAnimalsCarcinomaCell Line, TumorCell MovementDynamin IIIGene Expression ProfilingHumansLiver NeoplasmsLung NeoplasmsMaleMiceMicroRNAsNeoplasm InvasivenessDynamin IIIMicroRNAsmirn199 microRNA, humanpodocalyxinSialoglycoproteins

Identifiers

PMID21383689
PMCPMC3117973
OpenAlexW2158575987

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.